5WCJ

Crystal Structure of Human Methyltransferase-like protein 13 in complex with SAH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 

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This is version 1.2 of the entry. See complete history


Literature

The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates.

Jakobsson, M.E.Malecki, J.M.Halabelian, L.Nilges, B.S.Pinto, R.Kudithipudi, S.Munk, S.Davydova, E.Zuhairi, F.R.Arrowsmith, C.H.Jeltsch, A.Leidel, S.A.Olsen, J.V.Falnes, P.O.

(2018) Nat Commun 9: 3411-3411

  • DOI: https://doi.org/10.1038/s41467-018-05646-y
  • Primary Citation of Related Structures:  
    5WCJ

  • PubMed Abstract: 

    Eukaryotic elongation factor 1 alpha (eEF1A) delivers aminoacyl-tRNA to the ribosome and thereby plays a key role in protein synthesis. Human eEF1A is subject to extensive post-translational methylation, but several of the responsible enzymes remain unknown. Using a wide range of experimental approaches, we here show that human methyltransferase (MTase)-like protein 13 (METTL13) contains two distinct MTase domains targeting the N terminus and Lys55 of eEF1A, respectively. Our biochemical and structural analyses provide detailed mechanistic insights into recognition of the eEF1A N terminus by METTL13. Moreover, through ribosome profiling, we demonstrate that loss of METTL13 function alters translation dynamics and results in changed translation rates of specific codons. In summary, we here unravel the function of a human MTase, showing that it methylates eEF1A and modulates mRNA translation in a codon-specific manner.


  • Organizational Affiliation

    Department of Biosciences, Faculty of Mathematics and Natural Sciences, University of Oslo, 0316, Oslo, Norway. Magnus.Jakobsson@cpr.ku.dk.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Methyltransferase-like protein 13248Homo sapiensMutation(s): 0 
Gene Names: METTL13KIAA0859CGI-01
EC: 2.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N6R0 (Homo sapiens)
Explore Q8N6R0 
Go to UniProtKB:  Q8N6R0
PHAROS:  Q8N6R0
GTEx:  ENSG00000010165 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N6R0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.131α = 90
b = 67.45β = 90
c = 71.23γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-19
    Type: Initial release
  • Version 1.1: 2018-11-21
    Changes: Data collection, Database references
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description