Download MendeleyDesign, Structure, and Action of an Artificial Photosynthetic Reaction Center Protein
Ennist, N.M., Zhao, Z., Stayrook, S.E., Dutton, P.L., Moser, C.C.To be published.
5VJS
De Novo Photosynthetic Reaction Center Protein Equipped with Heme B, a synthetic Zn porphyrin, and Zn(II) cations
- PDB DOI: 10.2210/pdb5VJS/pdb
- Classification: DE NOVO PROTEIN
- Organism(s): synthetic construct
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-04-19 Released: 2018-04-25
- Funding Organization(s): Department of Energy (DOE, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.278
- R-Value Work: 0.234
- R-Value Observed: 0.237
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Reaction Center Maquette | A | 196 | synthetic construct | Mutation(s): 0 Gene Names: designed |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | Ligand Interaction | |
| 9D7 Query on 9D7 | C [auth A] | [4-(15-phenylporphyrin-5-yl-kappa~4~N~21~,N~22~,N~23~,N~24~)benzoato(2-)]zinc C33 H20 N4 O2 Zn BQOXGOKXDBIPTM-LTTHWXANSA-M |  | Ligand Interaction | |
| ZN Query on ZN | D [auth A], E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | F [auth A], G [auth A], H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.278
- R-Value Work: 0.234
- R-Value Observed: 0.237
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.749 | α = 90 |
| b = 43.749 | β = 90 |
| c = 245.737 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| AutoSol | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2017-04-19
- Released Date: 2018-04-25 Deposition Author(s): Ennist, N.M., Dutton, P.L., Stayrook, S.E., Moser, C.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Energy (DOE, United States) | United States | DESC0001035 |
Revision History (Full details and data files)
- Version 1.0: 2018-04-25
Type: Initial release - Version 1.1: 2022-03-16
Changes: Author supporting evidence, Data collection, Database references
