Biological Assembly 1  

 3D View: Structure

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 49-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1w1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 49-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1P1Q1R1S1T1U1V1W1X1Y1Z1a1b1c1d1e1f1g1h1i1j1k1l1m1n1o1p1q1r1s1t1u1v1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 2231.04 kDa 
• Atom Count: 143579 
• Residue Count: 10080 
• Unique protein chains: 49
• Unique nucleic acid chains: 3

5V93

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

• DOI: 10.2210/pdb5V93/pdb
• EMDataResource: EMD-8645

• Classification: RIBOSOME
• Organism(s): Mycobacterium tuberculosis, Streptomyces californicus
• Mutation(s): No 


• Deposited: 2017-03-22 Released: 2017-09-20 
• Deposition Author(s): Yang, K., Chang, J.-Y., Cui, Z., Li, X., Meng, R., Duan, L., Thongchol, J., Jakana, J., Huwe, C., Sacchettini, J., Zhang, J.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis.

Yang, K., Chang, J.Y., Cui, Z., Li, X., Meng, R., Duan, L., Thongchol, J., Jakana, J., Huwe, C.M., Sacchettini, J.C., Zhang, J.

(2017) Nucleic Acids Res 45: 10884-10894

• PubMed: 28977617 
• DOI: 10.1093/nar/gkx785
• Primary Citation of Related Structures:  
  5V7Q, 5V93


• PubMed Abstract: 
  

Ribosomes from Mycobacterium tuberculosis (Mtb) possess species-specific ribosomal RNA (rRNA) expansion segments and ribosomal proteins (rProtein). Here, we present the near-atomic structures of the Mtb 50S ribosomal subunit and the complete Mtb 70S ribosome, solved by cryo-electron microscopy. Upon joining of the large and small ribosomal subunits, a 100-nt long expansion segment of the Mtb 23S rRNA, named H54a or the 'handle', switches interactions from with rRNA helix H68 and rProtein uL2 to with rProtein bS6, forming a new intersubunit bridge 'B9'. In Mtb 70S, bridge B9 is mostly maintained, leading to correlated motions among the handle, the L1 stalk and the small subunit in the rotated and non-rotated states. Two new protein densities were discovered near the decoding center and the peptidyl transferase center, respectively. These results provide a structural basis for studying translation in Mtb as well as developing new tuberculosis drugs.

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Organizational Affiliation: 

Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L32	0	57	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmF, rpmF_1, rpmF_2, DSI38_18430, E5M52_21340, ERS007663_04026, ERS007665_03842, ERS007670_03634, ERS007679_01959, ERS007679_04546, ERS007681_04590, ERS007688_04223, ERS007720_04765, ERS007722_04489, ERS007741_04583, ERS013471_04149, ERS023446_04200, ERS027646_04445, ERS027659_04299, ERS027661_04209, ERS075361_04102, ERS094182_04418, F6W99_03678, FRD82_10340, SAMEA2683035_04216
Find proteins for A0A045IMI5 (Mycobacterium tuberculosis) Explore A0A045IMI5  Go to UniProtKB:  A0A045IMI5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L33	1	55	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmG2, rpmG, CAB90_00725, DSI38_24525, E5M52_05660, ERS007657_00226, ERS007661_00236, ERS007663_02220, ERS007665_02168, ERS007670_00505, ERS007703_00858, ERS007720_00737, ERS007741_01187, ERS013471_03613, ERS023446_03037, ERS027646_03149, ERS027659_00131, ERS027661_00210, ERS075361_00848, ERS094182_01375, F6W99_03307, FRD82_08750, SAMEA2683035_02069
Find proteins for A0A045HU86 (Mycobacterium tuberculosis) Explore A0A045HU86  Go to UniProtKB:  A0A045HU86

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L34	2	47	Mycobacterium tuberculosis	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35	3	64	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmI, DSI38_22585, E5M52_04975, ERS007661_03227, ERS007665_02257, ERS007670_01092, ERS007679_04341, ERS007681_04552, ERS007688_04034, ERS007703_01078, ERS007722_00425, ERS007741_03331, ERS013471_01258, ERS023446_00487, ERS024276_03476, ERS027646_00659, ERS027659_00624, ERS027661_00568, ERS075361_00026, ERS094182_02202, F6W99_00189, FRD82_08480, SAMEA2683035_01443
Find proteins for A0A045KKY9 (Mycobacterium tuberculosis) Explore A0A045KKY9  Go to UniProtKB:  A0A045KKY9

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L36	4	37	Mycobacterium tuberculosis	Mutation(s): 0

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L31	6	80	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmE, rpmE_1, CAB90_01471, DSI38_18515, E5M52_18745, ERS007657_01524, ERS007663_00111, ERS007665_02410, ERS007670_01886, ERS007679_00565, ERS007681_00043, ERS007688_00317, ERS007703_00166, ERS007720_01198, ERS007722_00196, ERS007741_01521, ERS013471_00790, ERS023446_01602, ERS024276_01318, ERS027646_00440, ERS027659_04256, ERS027661_00027, ERS075361_01596, ERS094182_01710, F6W99_04019, FRD82_19480, SAMEA2683035_01562
Find proteins for A0A045HLX7 (Mycobacterium tuberculosis) Explore A0A045HLX7  Go to UniProtKB:  A0A045HLX7

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L2	C	280	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplB, DSI38_05180, E5M52_09975, ERS007663_03147, ERS007665_03130, ERS007670_02768, ERS007679_03325, ERS007681_04144, ERS007688_02437, ERS007703_03955, ERS007720_01130, ERS007722_04351, ERS007741_01510, ERS013471_00612, ERS023446_00447, ERS024276_02370, ERS027646_00066, ERS027659_01091, ERS027661_02293, ERS075361_00775, ERS094182_01303, F6W99_03379, FRD82_02370, SAMEA2683035_02486
Find proteins for A0A045H5T7 (Mycobacterium tuberculosis) Explore A0A045H5T7  Go to UniProtKB:  A0A045H5T7

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L3	D	217	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplC, DSI38_24900, E5M52_05285, ERS007661_02454, ERS007663_03778, ERS007665_01163, ERS007670_00571, ERS007679_01243, ERS007703_00888, ERS007720_01133, ERS007741_01514, ERS013471_00609, ERS023446_00444, ERS024276_00865, ERS027646_00069, ERS027659_01094, ERS075361_00778, ERS094182_01306, F6W99_03376, FRD82_02355, SAMEA2683035_02489
Find proteins for A0A045HU18 (Mycobacterium tuberculosis) Explore A0A045HU18  Go to UniProtKB:  A0A045HU18

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L4	E	223	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplD, DSI38_24905, E5M52_05280, ERS007657_02866, ERS007688_02439, ERS007720_01132, ERS007722_04434, ERS013471_00610, ERS023446_00445, ERS027646_00068, ERS027659_01093, ERS027661_02295, ERS075361_00777, ERS094182_01305, F6W99_03377, FRD82_02360, SAMEA2683035_02488
Find proteins for A0A045J9H1 (Mycobacterium tuberculosis) Explore A0A045J9H1  Go to UniProtKB:  A0A045J9H1

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L5	F	187	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplE, DSI38_05240, E5M52_09915, ERS007657_01335, ERS007663_00382, ERS007665_03572, ERS007670_00651, ERS007679_00528, ERS007681_00691, ERS007688_00815, ERS007703_01055, ERS007720_04267, ERS007722_04137, ERS007741_01217, ERS013471_02706, ERS023446_00459, ERS024276_00085, ERS027646_00054, ERS027659_00069, ERS027661_00856, ERS075361_00763, ERS094182_01291, F6W99_03391, SAMEA2683035_02474
Find proteins for A0A045HUU0 (Mycobacterium tuberculosis) Explore A0A045HUU0  Go to UniProtKB:  A0A045HUU0

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L6	G	179	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplF, DSI38_05255, E5M52_09900, ERS007657_03368, ERS007661_03155, ERS007663_00385, ERS007665_03982, ERS007670_00648, ERS007679_00525, ERS007681_00688, ERS007688_04166, ERS007703_01052, ERS007720_03567, ERS007722_04517, ERS007741_01214, ERS013471_02709, ERS023446_00462, ERS024276_00088, ERS027659_00066, ERS027661_00853, ERS075361_00760, ERS094182_01288, FRD82_05680, SAMEA2683035_02471
Find proteins for A0A045JJU1 (Mycobacterium tuberculosis) Explore A0A045JJU1  Go to UniProtKB:  A0A045JJU1

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L9	H	152	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplI, rplI_1, DSI38_19150, E5M52_13315, ERS007657_02922, ERS007661_02345, ERS007663_00754, ERS007665_01876, ERS007670_02092, ERS007688_00902, ERS007703_00885, ERS007720_02802, ERS007722_00899, ERS013471_02691, ERS027646_03501, ERS027659_02995, ERS027661_04424, ERS075361_00493, ERS094182_00620, F6W99_02688, FRD82_07235, SAMEA2683035_00198
Find proteins for A0A045JW48 (Mycobacterium tuberculosis) Explore A0A045JW48  Go to UniProtKB:  A0A045JW48

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13	J	147	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplM, ERS007657_03631, ERS007661_03121, ERS007663_03035, ERS007665_03001, ERS007679_01993, ERS007681_03424, ERS007703_03116, ERS007722_03078, ERS027646_01625, ERS027659_01778, ERS027661_01576
Find proteins for A0A0T9D5H2 (Mycobacterium tuberculosis) Explore A0A0T9D5H2  Go to UniProtKB:  A0A0T9D5H2

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L14	K	122	Mycobacterium tuberculosis	Mutation(s): 0

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L15	L	146	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names: rplO, ERS007688_04067
Find proteins for A0A654TTE7 (Mycobacterium tuberculosis) Explore A0A654TTE7  Go to UniProtKB:  A0A654TTE7

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L16	M	138	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplP, CAB90_00807, DSI38_05200, E5M52_09955, ERS007670_03628, ERS007679_04277, ERS007688_04128, ERS007703_04865, ERS007720_04528, ERS007722_04455, ERS013471_02698, ERS023446_00451, ERS024276_01878, ERS027646_00062, ERS027659_03089, ERS027661_03490, ERS075361_00771, ERS094182_01299, F6W99_03383, FRD82_02390, SAMEA2683035_02482
Find proteins for A0A045IWV9 (Mycobacterium tuberculosis) Explore A0A045IWV9  Go to UniProtKB:  A0A045IWV9

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L17	N	180	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplQ, DSI38_18605, E5M52_15490, ERS007657_02051, ERS007661_01802, ERS007663_01918, ERS007665_01053, ERS007670_00939, ERS007679_01859, ERS007681_04003, ERS007688_02122, ERS007703_04393, ERS007720_00530, ERS007722_04216, ERS007741_04240, ERS013471_02378, ERS023446_02771, ERS024276_02876, ERS027646_02176, ERS075361_03463, ERS094182_03732, F6W99_02117, FRD82_04060, SAMEA2683035_02864
Find proteins for A0A045IVA2 (Mycobacterium tuberculosis) Explore A0A045IVA2  Go to UniProtKB:  A0A045IVA2

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L18	O	122	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplR, DSI38_05260, E5M52_09895, ERS007663_00386, ERS007679_00524, ERS013471_02710, ERS023446_00463, ERS024276_00089, ERS027646_02859, ERS075361_00759, ERS094182_01287, FRD82_05685, SAMEA2683035_02470
Find proteins for A0A045JK28 (Mycobacterium tuberculosis) Explore A0A045JK28  Go to UniProtKB:  A0A045JK28

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L19	P	113	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplS, CAB90_03238, DSI38_22250, E5M52_14940, ERS007657_02841, ERS007661_01764, ERS007663_00418, ERS007665_00244, ERS007670_00278, ERS007679_00186, ERS007681_01828, ERS007688_00353, ERS007703_01238, ERS007720_04647, ERS007722_00517, ERS007741_02533, ERS013471_00426, ERS023446_00748, ERS024276_01347, ERS027646_00405, ERS027659_03521, ERS075361_01973, ERS094182_02054, F6W99_01517, FRD82_03580, SAMEA2683035_02093
Find proteins for A0A045IDD2 (Mycobacterium tuberculosis) Explore A0A045IDD2  Go to UniProtKB:  A0A045IDD2

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L20	Q	129	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplT, DSI38_22580, E5M52_04970, ERS007661_03228, ERS007663_02622, ERS007665_02256, ERS007670_01093, ERS007679_04340, ERS007681_04551, ERS007688_04033, ERS007703_01077, ERS007720_00251, ERS007722_00424, ERS007741_03330, ERS013471_01259, ERS023446_00486, ERS024276_03477, ERS027659_00623, ERS075361_00025, ERS094182_02203, F6W99_00190, FRD82_08485, SAMEA2683035_01442
Find proteins for A0A045KJ85 (Mycobacterium tuberculosis) Explore A0A045KJ85  Go to UniProtKB:  A0A045KJ85

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
LSU ribosomal protein L21p	R	104	Mycobacterium tuberculosis	Mutation(s): 0

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L22	S	197	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplV, DSI38_05190, E5M52_09965, ERS013471_00614, ERS023446_00449, ERS027646_00064, ERS075361_00773, ERS094182_01301, F6W99_03381, FRD82_02380, SAMEA2683035_02484
Find proteins for A0A045H760 (Mycobacterium tuberculosis) Explore A0A045H760  Go to UniProtKB:  A0A045H760

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L23	T	100	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplW, DSI38_24910, E5M52_05275, ERS007657_02865, ERS007663_03148, ERS007670_02769, ERS007679_03326, ERS007681_04108, ERS007688_02438, ERS007703_03956, ERS007720_01131, ERS007722_04433, ERS007741_01511, ERS013471_00611, ERS023446_00446, ERS024276_02371, ERS027646_00067, ERS027659_01092, ERS027661_02294, ERS075361_00776, ERS094182_01304, F6W99_03378, FRD82_02365, SAMEA2683035_02487
Find proteins for A0A045J9M3 (Mycobacterium tuberculosis) Explore A0A045J9M3  Go to UniProtKB:  A0A045J9M3

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L24	U	105	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplX, DSI38_05235, E5M52_09920, ERS007657_01334, ERS007661_00777, ERS007663_00381, ERS007665_03573, ERS007670_00652, ERS007679_00529, ERS007681_00692, ERS007688_00816, ERS007703_01056, ERS007720_04268, ERS007722_04138, ERS007741_01218, ERS013471_02705, ERS023446_00458, ERS024276_00084, ERS027646_00055, ERS027659_00070, ERS027661_00857, ERS075361_00764, ERS094182_01292, F6W99_03390, FRD82_05660, SAMEA2683035_02475
Find proteins for A0A045IXU4 (Mycobacterium tuberculosis) Explore A0A045IXU4  Go to UniProtKB:  A0A045IXU4

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L25	V	215	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rplY, ctc, DSI38_18055, E5M52_12910, ERS007663_03728, ERS007665_00848, ERS007679_02013, ERS007722_02123, ERS013471_01423, ERS023446_01711, ERS027646_00593, ERS027659_03496, ERS075361_03206, ERS094182_03338, F6W99_03715, FRD82_15100, SAMEA2683035_03111
Find proteins for A0A045JAK4 (Mycobacterium tuberculosis) Explore A0A045JAK4  Go to UniProtKB:  A0A045JAK4

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L27	W	86	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmA, DSI38_26120, E5M52_04740, ERS007657_02111, ERS007661_02794, ERS007663_04002, ERS007665_02935, ERS007670_02518, ERS007679_03235, ERS007681_04426, ERS007688_02560, ERS007703_03827, ERS007720_03483, ERS007722_04004, ERS007741_01817, ERS013471_00617, ERS023446_00589, ERS024276_01323, ERS027646_01111, ERS075361_02829, ERS094182_02991, F6W99_01055, FRD82_05160, SAMEA2683035_00540
Find proteins for A0A045K0G1 (Mycobacterium tuberculosis) Explore A0A045K0G1  Go to UniProtKB:  A0A045K0G1

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L28	X	64	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmB, DSI38_02185, E5M52_06825, ERS007661_04635, ERS007663_03554, ERS007665_03011, ERS007670_03542, ERS007681_04087, ERS007688_02903, ERS007703_04315, ERS007720_04214, ERS007722_04168, ERS007741_02790, ERS013471_01068, ERS023446_00060, ERS024276_02871, ERS027646_03183, ERS027659_02720, ERS027661_04716, ERS075361_02425, ERS094182_02233, F6W99_01593, FRD82_13340, SAMEA2683035_02287
Find proteins for A0A045IDB8 (Mycobacterium tuberculosis) Explore A0A045IDB8  Go to UniProtKB:  A0A045IDB8

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L29	Y	77	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmC, CAB90_00808, DSI38_05205, E5M52_09950, ERS007657_03995, ERS007661_03836, ERS007663_03740, ERS007665_03747, ERS007670_03629, ERS007679_04276, ERS007681_00698, ERS007688_04127, ERS007703_04864, ERS007720_04527, ERS007722_04454, ERS007741_04797, ERS013471_02699, ERS023446_00452, ERS024276_01879, ERS027646_00061, ERS027659_03088, ERS027661_03491, ERS075361_00770, ERS094182_01298, F6W99_03384, FRD82_02395, SAMEA2683035_02481
Find proteins for A0A045IQ64 (Mycobacterium tuberculosis) Explore A0A045IQ64  Go to UniProtKB:  A0A045IQ64

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L30	Z	65	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpmD, CAB90_00821, DSI38_05270, E5M52_09885, ERS007657_03125, ERS007661_02721, ERS007663_00388, ERS007665_03587, ERS007670_04003, ERS007679_00522, ERS007681_04223, ERS007688_04068, ERS007703_04691, ERS007720_03565, ERS007722_04392, ERS007741_04384, ERS013471_02712, ERS023446_00465, ERS024276_03086, ERS027646_02857, ERS027659_04272, ERS027661_02662, ERS075361_00757, ERS094182_01285, F6W99_03397, FRD82_05695, SAMEA2683035_02468
Find proteins for A0A045H4J2 (Mycobacterium tuberculosis) Explore A0A045H4J2  Go to UniProtKB:  A0A045H4J2

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Capreomycin	b	6	Streptomyces californicus	Mutation(s): 0

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S3	c	274	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsC, DSI38_05195, E5M52_09960, ERS023446_00450, ERS024276_01877, ERS027646_00063, ERS027661_03489, ERS075361_00772, ERS094182_01300, F6W99_03382, FRD82_02385, SAMEA2683035_02483
Find proteins for A0A045H4H6 (Mycobacterium tuberculosis) Explore A0A045H4H6  Go to UniProtKB:  A0A045H4H6

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S4	d	201	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsD, DSI38_18615, E5M52_15480, ERS007670_03166, ERS007681_02725, ERS007703_01984, ERS007722_03694, ERS007741_03130, ERS013471_02376, ERS023446_02769, ERS024276_00666, ERS027646_02178, ERS027659_01236, ERS075361_03465, ERS094182_03734, F6W99_02119, FRD82_20615, SAMEA2683035_02862
Find proteins for A0A045GRS4 (Mycobacterium tuberculosis) Explore A0A045GRS4  Go to UniProtKB:  A0A045GRS4

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	e	220	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsE, DSI38_05265, E5M52_09890, ERS007663_00387, ERS007665_03588, ERS007679_00523, ERS013471_02711, ERS023446_00464, ERS027646_02858, ERS027659_04273, ERS075361_00758, F6W99_03396, FRD82_05690, SAMEA2683035_02469
Find proteins for A0A045JKV0 (Mycobacterium tuberculosis) Explore A0A045JKV0  Go to UniProtKB:  A0A045JKV0

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6	f	96	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsF, CAB90_00060, DSI38_19165, E5M52_13330, ERS007657_02363, ERS007661_02177, ERS007663_00751, ERS007665_01879, ERS007670_02095, ERS007679_00974, ERS007681_00776, ERS007688_00905, ERS007703_05288, ERS007720_02866, ERS007722_00902, ERS007741_01431, ERS013471_02694, ERS023446_03096, ERS027646_03697, ERS075361_00490, ERS094182_00623, F6W99_02685, FRD82_07250, SAMEA2683035_00195
Find proteins for A0A045JVY9 (Mycobacterium tuberculosis) Explore A0A045JVY9  Go to UniProtKB:  A0A045JVY9

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	g	156	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsG, DSI38_24785, E5M52_05400, ERS007663_01321, ERS007670_02612, ERS007688_03369, ERS007720_00659, ERS007722_02968, ERS007741_02260, ERS013471_00590, ERS023446_00426, ERS024276_01003, ERS027646_00041, ERS075361_00796, ERS094182_01324, F6W99_03358, FRD82_05115, SAMEA2683035_02507
Find proteins for A0A045JMN7 (Mycobacterium tuberculosis) Explore A0A045JMN7  Go to UniProtKB:  A0A045JMN7

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	h	132	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsH, DSI38_05250, E5M52_09905, ERS007663_00384, ERS007670_00649, ERS007679_00526, ERS007681_00689, ERS007703_01053, ERS007741_01215, ERS013471_02708, ERS023446_00461, ERS024276_00087, ERS027646_00052, ERS027659_00067, ERS027661_00854, ERS075361_00761, ERS094182_01289, F6W99_03393, FRD82_05675, SAMEA2683035_02472
Find proteins for A0A045IWX2 (Mycobacterium tuberculosis) Explore A0A045IWX2  Go to UniProtKB:  A0A045IWX2

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	i	151	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsI, E5M52_15560, ERS007663_03036, ERS007665_03000, ERS007670_03750, ERS007679_01994, ERS007681_03425, ERS007688_04075, ERS007703_03117, ERS007720_03282, ERS007722_03079, ERS007741_02715, ERS013471_03853, ERS023446_03940, ERS024276_03207, ERS027646_01624, ERS027659_01779, ERS027661_01577, ERS075361_03449, ERS094182_03718, F6W99_02103, SAMEA2683035_02877
Find proteins for A0A045I839 (Mycobacterium tuberculosis) Explore A0A045I839  Go to UniProtKB:  A0A045I839

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	j	101	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsJ, CAB90_00800, DSI38_24895, E5M52_05290, ERS007657_03161, ERS007661_02455, ERS007663_03779, ERS007665_01164, ERS007670_00572, ERS007679_01244, ERS007681_04534, ERS007688_04396, ERS007703_00889, ERS007720_01134, ERS007722_04491, ERS007741_01515, ERS013471_00608, ERS023446_00443, ERS024276_00866, ERS027646_00070, ERS027659_01095, ERS027661_03651, ERS075361_00779, ERS094182_01307, F6W99_03375, FRD82_02350, SAMEA2683035_02490
Find proteins for A0A045HTN2 (Mycobacterium tuberculosis) Explore A0A045HTN2  Go to UniProtKB:  A0A045HTN2

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	k	139	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsK, DSI38_18620, E5M52_15475, ERS007663_03221, ERS007670_03165, ERS007681_02724, ERS007703_01983, ERS007722_03695, ERS007741_03129, ERS013471_02375, ERS023446_02768, ERS024276_00667, ERS027646_02179, ERS027659_01237, ERS075361_03466, ERS094182_03735, F6W99_02120, FRD82_20610, SAMEA2683035_02861
Find proteins for A0A045I821 (Mycobacterium tuberculosis) Explore A0A045I821  Go to UniProtKB:  A0A045I821

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	l	124	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsL, DSI38_24780, ERS007657_01131, ERS007661_03240, ERS007663_01322, ERS007665_02172, ERS007670_02611, ERS007679_03360, ERS007681_03455, ERS007688_03370, ERS007703_03141, ERS007720_00660, ERS007722_02969, ERS007741_02261, ERS013471_00589, ERS023446_00425, ERS024276_01002, ERS027646_00042, ERS027659_02112, ERS027661_00649, ERS075361_00797, ERS094182_01325, F6W99_03357, FRD82_05120, SAMEA2683035_02508
Find proteins for M9TET4 (Mycobacterium tuberculosis) Explore M9TET4  Go to UniProtKB:  M9TET4

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	m	124	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsM, CAB90_03891, DSI38_18625, E5M52_15470, ERS007657_03513, ERS007661_02470, ERS007663_03222, ERS007665_02958, ERS007670_03164, ERS007679_03913, ERS007681_02723, ERS007688_02119, ERS007703_01982, ERS007720_00527, ERS007722_03696, ERS007741_03128, ERS013471_02374, ERS023446_02767, ERS024276_00668, ERS027659_01238, ERS027661_01215, ERS075361_03467, ERS094182_03736, F6W99_02121, FRD82_20605, SAMEA2683035_02860
Find proteins for A0A045GT82 (Mycobacterium tuberculosis) Explore A0A045GT82  Go to UniProtKB:  A0A045GT82

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14 type Z	n	61	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsN1, rpsN, rpsZ, DSI38_05245, E5M52_09910, ERS007661_03295, ERS007663_00383, ERS007670_00650, ERS007679_00527, ERS007681_00690, ERS007703_01054, ERS007720_04266, ERS007722_04136, ERS007741_01216, ERS013471_02707, ERS023446_00460, ERS024276_00086, ERS027646_00053, ERS027659_00068, ERS027661_00855, ERS075361_00762, ERS094182_01290, F6W99_03392, FRD82_05670, SAMEA2683035_02473
Find proteins for A0A045HUG3 (Mycobacterium tuberculosis) Explore A0A045HUG3  Go to UniProtKB:  A0A045HUG3

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S15	o	89	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsO, DSI38_21795, E5M52_04200, ERS007657_02943, ERS007661_01472, ERS007663_00167, ERS007665_01518, ERS007670_00890, ERS007679_01022, ERS007681_00820, ERS007688_01075, ERS007720_00917, ERS007722_02267, ERS013471_00759, ERS023446_01246, ERS027646_00025, ERS027659_01557, ERS075361_01250, ERS094182_03273, F6W99_01390, FRD82_14735, SAMEA2683035_01613
Find proteins for A0A045JF49 (Mycobacterium tuberculosis) Explore A0A045JF49  Go to UniProtKB:  A0A045JF49

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	p	162	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsP, DSI38_22225, E5M52_14915, ERS007679_00181, ERS007681_01823, ERS007688_00348, ERS007722_00512, ERS007741_03717, ERS013471_00431, ERS023446_00743, ERS024276_03610, ERS027646_00645, ERS027661_01003, ERS075361_01968, ERS094182_02049, F6W99_01523, FRD82_03555, SAMEA2683035_02088
Find proteins for A0A045JER3 (Mycobacterium tuberculosis) Explore A0A045JER3  Go to UniProtKB:  A0A045JER3

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	q	135	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsQ, ERS007665_03746, ERS007670_03630, ERS007679_04275, ERS007681_00697, ERS007688_04126, ERS007703_04863, ERS007720_04526, ERS007722_04453, ERS013471_02700, ERS023446_00453, ERS024276_01880, ERS027646_00060, ERS027659_03087, ERS027661_01551, ERS075361_00769, ERS094182_01297, F6W99_03385, SAMEA2683035_02480
Find proteins for A0A0E9AP91 (Mycobacterium tuberculosis) Explore A0A0E9AP91  Go to UniProtKB:  A0A0E9AP91

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	r	84	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsR, rpsR1, DSI38_19155, E5M52_13320, ERS007661_02346, ERS007663_00753, ERS007665_01877, ERS007670_02093, ERS007679_00972, ERS007681_00774, ERS007688_00903, ERS007703_00886, ERS007720_02803, ERS007722_00900, ERS007741_01430, ERS013471_02692, ERS023446_03094, ERS024276_04082, ERS027646_03502, ERS027659_02996, ERS027661_04425, ERS075361_00492, ERS094182_00621, F6W99_02687, FRD82_07240, SAMEA2683035_00197
Find proteins for A0A045JW21 (Mycobacterium tuberculosis) Explore A0A045JW21  Go to UniProtKB:  A0A045JW21

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	s	93	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsS, CAB90_00805, DSI38_05185, E5M52_09970, ERS007657_03195, ERS007661_02323, ERS007663_03146, ERS007665_03131, ERS007670_02767, ERS007679_03324, ERS007681_04143, ERS007688_02436, ERS007703_03954, ERS007720_01129, ERS007722_04350, ERS007741_01509, ERS013471_00613, ERS023446_00448, ERS024276_02369, ERS027646_00065, ERS027659_01090, ERS027661_02292, ERS075361_00774, ERS094182_01302, F6W99_03380, FRD82_02375, SAMEA2683035_02485
Find proteins for A0A045IXT2 (Mycobacterium tuberculosis) Explore A0A045IXT2  Go to UniProtKB:  A0A045IXT2

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	t	86	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  rpsT, DSI38_10690, E5M52_10040, ERS007657_00458, ERS007661_00641, ERS007663_00292, ERS007665_01161, ERS007670_00588, ERS007679_02838, ERS007681_01506, ERS007688_02236, ERS007703_01907, ERS007720_03744, ERS007722_01325, ERS007741_02011, ERS013471_02776, ERS023446_02341, ERS024276_02943, ERS027646_03579, ERS027659_00894, ERS027661_02456, ERS075361_03839, ERS094182_02886, F6W99_01023, FRD82_04400, SAMEA2683035_02724
Find proteins for A0A045GXQ2 (Mycobacterium tuberculosis) Explore A0A045GXQ2  Go to UniProtKB:  A0A045GXQ2

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial domain of uncharacterised function (DUF1713)	x	33	Mycobacterium tuberculosis	Mutation(s): 0

Entity ID: 7
Molecule	Chains	Length	Organism	Image
23S rRNA	A	3138	Mycobacterium tuberculosis

Entity ID: 8
Molecule	Chains	Length	Organism	Image
5S rRNA	B	115	Mycobacterium tuberculosis

Entity ID: 32
Molecule	Chains	Length	Organism	Image
16S rRNA	a	1537	Mycobacterium tuberculosis

Small Molecules

Modified Residues  3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
DPP	b	L-PEPTIDE LINKING	C3 H8 N2 O2		ALA
KBE	b	L-PEPTIDE LINKING	C6 H14 N2 O2		LYS
MYN	b	L-PEPTIDE LINKING	C6 H12 N4 O2		ARG

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 33
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002272	b	Capreomycin 1B	Cyclic peptide /  Inhibitor		--

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-03-22 
• Released Date: 2017-09-20 
Deposition Author(s): Yang, K., Chang, J.-Y., Cui, Z., Li, X., Meng, R., Duan, L., Thongchol, J., Jakana, J., Huwe, C., Sacchettini, J., Zhang, J.

Revision History 

• Version 1.0: 2017-09-20
  Type: Initial release
  
• Version 1.1: 2017-10-25
  Changes: Database references
• Version 1.2: 2017-11-01
  Changes: Database references
• Version 1.3: 2020-08-12
  Changes: Database references, Derived calculations, Structure summary