5V84

CECR2 in complex with Cpd6 (6-allyl-N,2-dimethyl-7-oxo-N-(1-(1-phenylethyl)piperidin-4-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4-carboxamide)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2).

Crawford, T.D.Audia, J.E.Bellon, S.Burdick, D.J.Bommi-Reddy, A.Cote, A.Cummings, R.T.Duplessis, M.Flynn, E.M.Hewitt, M.Huang, H.R.Jayaram, H.Jiang, Y.Joshi, S.Kiefer, J.R.Murray, J.Nasveschuk, C.G.Neiss, A.Pardo, E.Romero, F.A.Sandy, P.Sims, R.J.Tang, Y.Taylor, A.M.Tsui, V.Wang, J.Wang, S.Wang, Y.Xu, Z.Zawadzke, L.Zhu, X.Albrecht, B.K.Magnuson, S.R.Cochran, A.G.

(2017) ACS Med Chem Lett 8: 737-741

  • DOI: 10.1021/acsmedchemlett.7b00132
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The biological function of bromodomains, epigenetic readers of acetylated lysine residues, remains largely unknown. Herein we report our efforts to discover a potent and selective inhibitor of the bromodomain of cat eye syndrome chromosome region can ...

    The biological function of bromodomains, epigenetic readers of acetylated lysine residues, remains largely unknown. Herein we report our efforts to discover a potent and selective inhibitor of the bromodomain of cat eye syndrome chromosome region candidate 2 (CECR2). Screening of our internal medicinal chemistry collection led to the identification of a pyrrolopyridone chemical lead, and subsequent structure-based drug design led to a potent and selective CECR2 bromodomain inhibitor (GNE-886) suitable for use as an in vitro tool compound.


    Organizational Affiliation

    Genentech Inc., 1 DNA Way, South San Francisco, California 94080, United States.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cat eye syndrome critical region protein 2
A, B, C, D
140Homo sapiensMutation(s): 0 
Gene Names: CECR2KIAA1740
Find proteins for Q9BXF3 (Homo sapiens)
Go to UniProtKB:  Q9BXF3
NIH Common Fund Data Resources
PHAROS  Q9BXF3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
96V
Query on 96V

Download CCD File 
A, B, C, D
N,2-dimethyl-7-oxo-N-{1-[(1S)-1-phenylethyl]piperidin-4-yl}-6-(prop-2-en-1-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4- carboxamide
C26 H32 N4 O2
WFCPQMAYBTUYAR-IBGZPJMESA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.184α = 90
b = 116.488β = 90
c = 132.93γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
BUSTERrefinement
PDB_EXTRACTdata extraction
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-06-14
    Type: Initial release
  • Version 1.1: 2017-08-09
    Changes: Database references