5U70

Chicken Slo2.2 in an open conformation vitrified in the presence of 300 mM NaCl


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural Titration of Slo2.2, a Na(+)-Dependent K(+) Channel.

Hite, R.K.MacKinnon, R.

(2017) Cell 168: 390-399.e11

  • DOI: https://doi.org/10.1016/j.cell.2016.12.030
  • Primary Citation of Related Structures:  
    5U70, 5U76

  • PubMed Abstract: 

    The stable structural conformations that occur along the complete reaction coordinate for ion channel opening have never been observed. In this study, we describe the equilibrium ensemble of structures of Slo2.2, a neuronal Na + -activated K + channel, as a function of the Na + concentration. We find that Slo2.2 exists in multiple closed conformations whose relative occupancies are independent of Na + concentration. An open conformation emerges from an ensemble of closed conformations in a highly Na + -dependent manner, without evidence of Na + -dependent intermediates. In other words, channel opening is a highly concerted, switch-like process. The midpoint of the structural titration matches that of the functional titration. A maximum open conformation probability approaching 1.0 and maximum functional open probability approaching 0.7 imply that, within the class of open channels, there is a subclass that is not permeable to ions.


  • Organizational Affiliation

    Rockefeller University and Howard Hughes Medical Institute, 1230 York Avenue, New York, NY 10065, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium channel subfamily T member 11,201Gallus gallusMutation(s): 0 
Gene Names: KCNT1SLACK
Membrane Entity: Yes 
UniProt
Find proteins for Q8QFV0 (Gallus gallus)
Explore Q8QFV0 
Go to UniProtKB:  Q8QFV0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8QFV0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
MODEL REFINEMENTREFMAC
RECONSTRUCTIONFREALIGN

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM43949
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-08
    Type: Initial release
  • Version 1.1: 2017-07-26
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2018-07-18
    Changes: Data collection, Experimental preparation
  • Version 1.3: 2019-11-20
    Changes: Author supporting evidence
  • Version 1.4: 2024-03-13
    Changes: Data collection, Database references, Derived calculations, Refinement description