5U2A | pdb_00005u2a

Crystal structure of Brucella canis Acyl-CoA Synthetase

PDB DOI: https://doi.org/10.2210/pdb5U2A/pdb

Classification: LIGASE
Organism(s): Brucella canis ATCC 23365
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-11-30 Released: 2016-12-21
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fox III, D., Abendroth, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.228 (Depositor), 0.231 (DCC)
R-Value Work:
0.191 (Depositor), 0.196 (DCC)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Brucella canis Acyl-CoA Synthetase

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fox III, D., Abendroth, J.

To be published.

Macromolecule Content

Total Structure Weight: 60.7 kDa
Atom Count: 4,031
Modeled Residue Count: 542
Deposited Residue Count: 564
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AMP-dependent synthetase and ligase	A	564	Brucella canis ATCC 23365	Mutation(s): 0 Gene Names: BCAN_B0452
UniProt
Find proteins for A9MB96 (Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)) Explore A9MB96 Go to UniProtKB: A9MB96
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A9MB96
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.228 (Depositor), 0.231 (DCC)
R-Value Work: 0.191 (Depositor), 0.196 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.6	α = 90
b = 92.2	β = 90
c = 141.19	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-21

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2016-12-21
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.