5TLH

Fructose-1,6-bisphosphate aldolase from rabbit muscle in complex with the inhibitor 2-naphthol 6-bisphosphonate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.150 
  • R-Value Observed: 0.151 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Bisphosphonate based inhibitors of mammalian glycolytic aldolase

Heron, P.W.Djilliali, R.Blonski, C.Sygusch, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Fructose-bisphosphate aldolase A
A, B, C, D
363Oryctolagus cuniculusMutation(s): 0 
Gene Names: ALDOA
EC: 4.1.2.13
Find proteins for P00883 (Oryctolagus cuniculus)
Go to UniProtKB:  P00883
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RD2
Query on RD2

Download CCD File 
A, B, C, D
[(6-hydroxynaphthalen-2-yl)methylene]bis(phosphonic acid)
C11 H12 O7 P2
KBQHMDQNDJAVLF-UHFFFAOYSA-N
 Ligand Interaction
MDN
Query on MDN

Download CCD File 
A, B, C, D
METHYLENEDIPHOSPHONIC ACID
C H6 O6 P2
MBKDYNNUVRNNRF-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
B, D
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.150 
  • R-Value Observed: 0.151 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.569α = 90
b = 103.141β = 98.87
c = 84.865γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)Canada--

Revision History 

  • Version 1.0: 2017-10-25
    Type: Initial release
  • Version 1.1: 2020-01-08
    Changes: Author supporting evidence