5TGH

Structure of the SNX5 PX domain in complex with chlamydial protein IncE in space group P32


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Structural basis for the hijacking of endosomal sorting nexin proteins byChlamydia trachomatis.

Paul, B.Kim, H.S.Kerr, M.C.Huston, W.M.Teasdale, R.D.Collins, B.M.

(2017) Elife 6

  • DOI: https://doi.org/10.7554/eLife.22311
  • Primary Citation of Related Structures:  
    5TGH

  • PubMed Abstract: 

    During infection chlamydial pathogens form an intracellular membrane-bound replicative niche termed the inclusion, which is enriched with bacterial transmembrane proteins called Incs. Incs bind and manipulate host cell proteins to promote inclusion expansion and provide camouflage against innate immune responses. Sorting nexin (SNX) proteins that normally function in endosomal membrane trafficking are a major class of inclusion-associated host proteins, and are recruited by IncE/CT116. Crystal structures of the SNX5 phox-homology (PX) domain in complex with IncE define the precise molecular basis for these interactions. The binding site is unique to SNX5 and related family members SNX6 and SNX32. Intriguingly the site is also conserved in SNX5 homologues throughout evolution, suggesting that IncE captures SNX5-related proteins by mimicking a native host protein interaction. These findings thus provide the first mechanistic insights both into how chlamydial Incs hijack host proteins, and how SNX5-related PX domains function as scaffolds in protein complex assembly.


  • Organizational Affiliation

    Institute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sorting nexin-5
A, C, E, G
152Homo sapiensMutation(s): 0 
Gene Names: SNX5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y5X3 (Homo sapiens)
Explore Q9Y5X3 
Go to UniProtKB:  Q9Y5X3
PHAROS:  Q9Y5X3
GTEx:  ENSG00000089006 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y5X3
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
IncE
B, D, F, H
23Chlamydia trachomatisMutation(s): 0 
Gene Names: incE
UniProt
Find proteins for B7SCI5 (Chlamydia trachomatis)
Explore B7SCI5 
Go to UniProtKB:  B7SCI5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB7SCI5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.64α = 90
b = 100.64β = 90
c = 71.65γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1058734
Australian Research Council (ARC)AustraliaDP150100364
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1061574

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-03
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Author supporting evidence
  • Version 1.2: 2018-01-17
    Changes: Author supporting evidence
  • Version 1.3: 2018-02-28
    Changes: Database references
  • Version 1.4: 2018-03-28
    Changes: Data collection, Database references
  • Version 1.5: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.6: 2023-10-04
    Changes: Data collection, Database references, Refinement description