5QSH

PanDDA analysis group deposition -- Crystal Structure of human Brachyury G177D variant in complex with Z2856434868


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
T-box transcription factor TA172Homo sapiensMutation(s): 1 
Gene Names: TBXTT
UniProt & NIH Common Fund Data Resources
Find proteins for O15178 (Homo sapiens)
Explore O15178 
Go to UniProtKB:  O15178
PHAROS:  O15178
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NVY (Subject of Investigation/LOI)
Query on NVY

Download Ideal Coordinates CCD File 
B [auth A]1-ethyl-N-(2-fluorophenyl)piperidin-4-amine
C13 H19 F N2
JXDKAPWBGLJUDX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.38α = 90
b = 99.38β = 90
c = 99.29γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-21
    Type: Initial release