5QRY

PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z2856434890


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
T-box transcription factor T
A
172Homo sapiensMutation(s): 0 
Gene Names: TBXT (T)
Find proteins for O15178 (Homo sapiens)
Go to UniProtKB:  O15178
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NZD
Query on NZD

Download SDF File 
Download CCD File 
A
4-methyl-N-phenylpiperazine-1-carboxamide
C12 H17 N3 O
SXNAOFHNRSEHNL-UHFFFAOYSA-N
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.225 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 60.095α = 90.00
b = 60.095β = 90.00
c = 110.247γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACphasing
PDB_EXTRACTdata extraction
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release
  • Version 1.1: 2019-08-07
    Type: Author supporting evidence, Data collection, Structure summary