5QJ0

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 6-[ethyl(methylsulfonyl)amino]-2-(4-fluorophenyl)-N-methyl-5-(3-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure-Property Basis for Solving Transporter-Mediated Efflux and Pan-Genotypic Inhibition of Hepatitis C Virus NS5B Replicase in Benzofuran Palm Site Allosteric Inhibitors

Yeung, K.-S.Beno, B.R.Mosure, K.Zhu, J.Grant-Young, K.A.Parcella, K.Anjanappa, P.Bora, R.O.Selvakumar, K.Wang, Y.-K.Fang, H.Rigat, K.Liu, M.Lemm, J.Sheriff, S.Witmer, M.Tredup, J.Jardel, A.Kish, K.Parker, D.Haskell, R.Santone, K.Meanwell, N.A.Soars, M.G.Roberts, S.B.Kadow, J.F.

(2018) Acs Med.Chem.Lett. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA-dependent RNA polymerase
A
574Hepacivirus CMutation(s): 1 
Find proteins for R9THT8 (Hepacivirus C)
Go to UniProtKB:  R9THT8
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SCN
Query on SCN

Download SDF File 
Download CCD File 
A
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
2PE
Query on 2PE

Download SDF File 
Download CCD File 
A
NONAETHYLENE GLYCOL
C18 H38 O10
YZUUTMGDONTGTN-UHFFFAOYSA-N
 Ligand Interaction
J6D
Query on J6D

Download SDF File 
Download CCD File 
A
6-[ethyl(methylsulfonyl)amino]-2-(4-fluorophenyl)-N-methyl-5-(3-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide
C33 H30 F N5 O5 S
AWFOIGBVORNGMF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.173 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 62.250α = 90.00
b = 89.986β = 90.00
c = 124.090γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
BUSTERrefinement
AMoREphasing
XDSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-13 
  • Released Date: 2018-11-21 
  • Deposition Author(s): Sheriff, S.

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release