5O0V

crystal structure of E. coli GAP-DH by fortuitous crystallization as an impurity from a solution of human liver FBPase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

fortuitous crystallization of GAP-DH impurity from a solution of human liver FBPase

Ruf, A.Benz, J.Rudolph, M.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glyceraldehyde-3-phosphate dehydrogenase A
A
330Escherichia coli O157:H7Mutation(s): 0 
Gene Names: gapA
EC: 1.2.1.12
Find proteins for P0A9B4 (Escherichia coli O157:H7)
Go to UniProtKB:  P0A9B4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.154 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 121.384α = 90.00
b = 121.384β = 90.00
c = 157.004γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction
SADABSdata scaling
COMOphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 2.0: 2017-07-19
    Type: Atomic model, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary
  • Version 2.1: 2018-05-23
    Type: Data collection, Database references, Source and taxonomy