5N6P
AMPA receptor NTD mutant
- PDB DOI: https://doi.org/10.2210/pdb5N6P/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Rattus norvegicus
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Deposited: 2017-02-15 Released: 2018-03-07 
- Funding Organization(s): Medical Research Council (United Kingdom)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.249 
- R-Value Work: 0.206 
- R-Value Observed: 0.208 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamate receptor 2 | 416 | Rattus norvegicus | Mutation(s): 2  Gene Names: Gria2, Glur2 | ||
UniProt | |||||
Find proteins for P19491 (Rattus norvegicus) Explore P19491  Go to UniProtKB:  P19491 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P19491 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A], C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.249 
- R-Value Work: 0.206 
- R-Value Observed: 0.208 
- Space Group: P 41 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 94.5 | α = 90 |
b = 94.5 | β = 90 |
c = 160.57 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-03-07  Deposition Author(s): Rossmann, M., Krieger, J.M.
Funding Organization | Location | Grant Number |
---|---|---|
Medical Research Council (United Kingdom) | United Kingdom | MC_U105174197 |
Revision History (Full details and data files)
- Version 1.0: 2018-03-07
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2024-01-17
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary