Download MendeleyCocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with different Fasudil-derivatives
Wienen-Schmidt, B., Jonker, H., Gerber, H.-D., Saxena, K., Kudlinzki, D., Sreeramulu, S., Heine, A., Schwalbe, H., Klebe, G.To be published.
5M0C
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with the Fasudil-fragment isoquinoline-5-sulfonamide
- PDB DOI: 10.2210/pdb5M0C/pdb
- Classification: TRANSFERASE
- Organism(s): Cricetulus griseus, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-10-04 Released: 2018-06-06
- Funding Organization(s): European Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.200
- R-Value Work: 0.173
- R-Value Observed: 0.174
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase catalytic subunit alpha | A | 353 | Cricetulus griseus | Mutation(s): 0 Gene Names: PRKACA EC: 2.7.11.11 |  |
UniProt | |||||
Find proteins for P25321 (Cricetulus griseus) Explore P25321 Go to UniProtKB: P25321 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25321 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase inhibitor alpha | B | 20 | Homo sapiens | Mutation(s): 0 Gene Names: PKIA, PRKACN1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61925 (Homo sapiens) Explore P61925 Go to UniProtKB: P61925 | |||||
PHAROS: P61925 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61925 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 7CB Query on 7CB | C [auth A] | isoquinoline-5-sulfonamide C9 H8 N2 O2 S BFIWZEKPARJYJE-UHFFFAOYSA-N |  | Ligand Interaction | |
| MRD Query on MRD | D [auth A] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | Ligand Interaction | |
| DMS Query on DMS | E [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.200
- R-Value Work: 0.173
- R-Value Observed: 0.174
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.393 | α = 90 |
| b = 75.355 | β = 90 |
| c = 80.196 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-06-06 Deposition Author(s): Wienen-Schmidt, B., Heine, A., Klebe, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Research Council | Belgium | 268145 - Project Acronym: DrugProfilBind |
Revision History (Full details and data files)
- Version 1.0: 2018-06-06
Type: Initial release
