5L85

Solution structure of the complex between human ZNHIT3 and NUFIP1 proteins


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Structural Features of the Box C/D snoRNP Pre-assembly Process Are Conserved through Species.

Quinternet, M.Chagot, M.E.Rothe, B.Tiotiu, D.Charpentier, B.Manival, X.

(2016) Structure 24: 1693-1706

  • DOI: https://doi.org/10.1016/j.str.2016.07.016
  • Primary Citation of Related Structures:  
    5L85

  • PubMed Abstract: 

    Box C/D small nucleolar ribonucleoparticles (snoRNPs) support 2'-O-methylation of several target RNAs. They share a common set of four core proteins (SNU13, NOP58, NOP56, and FBL) that are assembled on different guide small nucleolar RNAs. Assembly of these entities involves additional protein factors that are absent in the mature active particle. In this context, the platform protein NUFIP1/Rsa1 establishes direct and simultaneous contacts with core proteins and with the components of the assembly machinery. Here, we solve the nuclear magnetic resonance (NMR) structure of a complex resulting from interaction between protein fragments of human NUFIP1 and its cofactor ZNHIT3, and emphasize their imbrication. Using yeast two-hybrid and complementation assays, protein co-expression, isothermal titration calorimetry, and NMR, we demonstrate that yeast and human complexes involving NUFIP1/Rsa1p, ZNHIT3/Hit1p, and SNU13/Snu13p share strong structural similarities, suggesting that the initial steps of the box C/D snoRNP assembly process are conserved among species.


  • Organizational Affiliation

    FR CNRS-3209 Bioingénierie Moléculaire, Cellulaire et Thérapeutique (BMCT), CNRS, Université de Lorraine, Biopôle, Campus Biologie-Santé, CS 50184, 54505 Vandœuvre-lès-Nancy Cedex, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Zinc finger HIT domain-containing protein 375Homo sapiensMutation(s): 0 
Gene Names: ZNHIT3TRIP3
UniProt & NIH Common Fund Data Resources
Find proteins for Q15649 (Homo sapiens)
Explore Q15649 
Go to UniProtKB:  Q15649
PHAROS:  Q15649
GTEx:  ENSG00000273611 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15649
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear fragile X mental retardation-interacting protein 134Homo sapiensMutation(s): 0 
Gene Names: NUFIP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UHK0 (Homo sapiens)
Explore Q9UHK0 
Go to UniProtKB:  Q9UHK0
PHAROS:  Q9UHK0
GTEx:  ENSG00000083635 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UHK0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 160 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-11-BSV8-01503

Revision History  (Full details and data files)

  • Version 1.0: 2016-08-31
    Type: Initial release
  • Version 1.1: 2016-09-21
    Changes: Database references
  • Version 1.2: 2016-09-28
    Changes: Database references
  • Version 1.3: 2016-10-19
    Changes: Database references
  • Version 1.4: 2017-09-06
    Changes: Author supporting evidence
  • Version 1.5: 2019-05-08
    Changes: Data collection
  • Version 1.6: 2023-06-14
    Changes: Data collection, Database references, Other