5KOA | pdb_00005koa

Structure of Escherichia coli ZapD bound to the C-terminal tail of FtsZ

PDB DOI: https://doi.org/10.2210/pdb5KOA/pdb

Classification: CELL CYCLE
Organism(s): Escherichia coli S88, Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-06-29 Released: 2017-01-25
Deposition Author(s): Schumacher, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free:
0.266 (Depositor), 0.263 (DCC)
R-Value Work:
0.230 (Depositor), 0.230 (DCC)
R-Value Observed:
0.234 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of Escherichia coli ZapD bound to the C-terminal tail of FtsZ

Schumacher, M.

To be published.

Macromolecule Content

Total Structure Weight: 57.84 kDa
Atom Count: 4,130
Modeled Residue Count: 504
Deposited Residue Count: 504
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell division protein ZapD	A, B	246	Escherichia coli S88	Mutation(s): 0 Gene Names: zapD, ECS88_0105
UniProt
Find proteins for B7MAM4 (Escherichia coli O45:K1 (strain S88 / ExPEC)) Explore B7MAM4 Go to UniProtKB: B7MAM4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B7MAM4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C-terminal tail of FtsZ	C [auth D]	12	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A9A6 (Escherichia coli (strain K12)) Explore P0A9A6 Go to UniProtKB: P0A9A6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A9A6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.67 Å
R-Value Free: 0.266 (Depositor), 0.263 (DCC)
R-Value Work: 0.230 (Depositor), 0.230 (DCC)
R-Value Observed: 0.234 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.322	α = 90
b = 51.912	β = 90.68
c = 79.146	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-01-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-01-25
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.