5KCO

SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy

Tempel, W.Harding, R.J.Mader, P.Dobrovetsky, E.Walker, J.R.Brown, P.J.Schapira, M.Arrowsmith, C.H.Edwards, A.M.Santhakumar, S.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase SETDB1
A
225Homo sapiensMutation(s): 0 
Gene Names: SETDB1 (KIAA0067, KMT1E)
EC: 2.1.1.43
Find proteins for Q15047 (Homo sapiens)
Go to Gene View: SETDB1
Go to UniProtKB:  Q15047
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
DMS
Query on DMS

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Download CCD File 
A
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
6RO
Query on 6RO

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Download CCD File 
A
~{N}-(4-chlorophenyl)methanesulfonamide
C7 H8 Cl N O2 S
TZBQEYJPVLKASB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 55.772α = 90.00
b = 63.761β = 90.00
c = 70.522γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2016-07-27
    Type: Initial release