5K71

apo Dbr1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The RNA lariat debranching enzyme Dbr1: metal dependence and branched RNA co-crystal structures

Clark, N.E.Katolik, A.Roberts, K.Taylor, A.B.Holloway, S.P.Schuermann, J.P.Montemayor, E.J.Stevens, S.W.Fitzpatrick, P.F.Damha, M.J.Hart, P.J.

(2016) Proc Natl Acad Sci U S A 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
RNA lariat debranching enzyme, putativeA, B, C, D, E356Entamoeba histolyticaMutation(s): 0 
Gene Names: EHI_062730
UniProt
Find proteins for C4M1P9 (Entamoeba histolytica)
Explore C4M1P9 
Go to UniProtKB:  C4M1P9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC4M1P9
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.11α = 90
b = 142.163β = 90
c = 214.3γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-07
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Author supporting evidence, Database references