5JRM

Crystal Structure of a Xylanase at 1.56 Angstroem resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of a Xylanase at 1.56 Angstroem resolution

Gomez, S.Payne, A.M.Savko, M.Fox, G.C.Shepard, W.E.Fernandez, F.J.Vega, M.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Endo-1,4-beta-xylanaseA194Fusarium oxysporumMutation(s): 0 
Gene Names: FOTG_15646
EC: 3.2.1.8
UniProt
Find proteins for X0M5X0 (Fusarium oxysporum f. sp. vasinfectum 25433)
Explore X0M5X0 
Go to UniProtKB:  X0M5X0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupX0M5X0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
E [auth A]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.233α = 90
b = 35.886β = 90
c = 48.343γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainPET2008_0101
Spanish Ministry of Economy and CompetitivenessSpainBIO2009-11184
Spanish Ministry of Economy and CompetitivenessSpainBFU2010-22260-C02-02
Spanish Ministry of Economy and CompetitivenessSpainCTQ2015-66206-C2-2-R
European UnionSpainComplexINC No. 279039

Revision History  (Full details and data files)

  • Version 1.0: 2017-05-24
    Type: Initial release
  • Version 1.1: 2017-09-13
    Changes: Author supporting evidence