5JPO | pdb_00005jpo

Complex structure of human elongation factor 1B gamma GST-liked domain and delta N-terminal domain

• PDB DOI: https://doi.org/10.2210/pdb5JPO/pdb

• Classification: TRANSLATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-05-04 Released: 2017-05-10 
• Deposition Author(s): Choi, Y.S., Kang, B.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.203 (Depositor), 0.202 (DCC) 
• R-Value Work: 
  0.168 (Depositor), 0.171 (DCC) 
• R-Value Observed: 
  0.169 (Depositor) 

Literature

Complex structure of human elongation factor 1B gamma GST-liked domain and delta N-terminal domain

Choi, Y.S., Kang, B.S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 10-mer - A8B2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 103.34 kDa 
• Atom Count: 7,603 
• Modeled Residue Count: 886 
• Deposited Residue Count: 912 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 1-gamma	A, B, C, D	220	Homo sapiens	Mutation(s): 0  Gene Names: EEF1G, EF1G, PRO1608
UniProt & NIH Common Fund Data Resources
Find proteins for P26641 (Homo sapiens) Explore P26641  Go to UniProtKB:  P26641
GTEx:  ENSG00000254772

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 1-delta	E	32	Homo sapiens	Mutation(s): 0  Gene Names: EEF1D, EF1D
UniProt & NIH Common Fund Data Resources
Find proteins for P29692 (Homo sapiens) Explore P29692  Go to UniProtKB:  P29692
PHAROS:  P29692 GTEx:  ENSG00000104529

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	F [auth A], G [auth A], H [auth A], I [auth B], J [auth D]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.203 (Depositor), 0.202 (DCC) 
• R-Value Work:  0.168 (Depositor), 0.171 (DCC) 
• R-Value Observed: 0.169 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.499	α = 90
b = 101.054	β = 98.75
c = 93.732	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-05-10 
Deposition Author(s): Choi, Y.S., Kang, B.S.

Revision History  

• Version 1.0: 2017-05-10
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references