5JHJ | pdb_00005jhj

M. Oryzae effector AVR-Pia mutant H3


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 5JHJ

This is version 1.5 of the entry. See complete history

Literature

Recognition of the Magnaporthe oryzae Effector AVR-Pia by the Decoy Domain of the Rice NLR Immune Receptor RGA5.

Ortiz, D.de Guillen, K.Cesari, S.Chalvon, V.Gracy, J.Padilla, A.Kroj, T.

(2017) Plant Cell 29: 156-168

  • DOI: https://doi.org/10.1105/tpc.16.00435
  • Primary Citation Related Structures: 
    5JHJ

  • PubMed Abstract: 

    Nucleotide binding domain and leucine-rich repeat proteins (NLRs) are important receptors in plant immunity that allow recognition of pathogen effectors. The rice ( Oryza sativa ) NLR RGA5 recognizes the Magnaporthe oryzae effector AVR-Pia through direct interaction. Here, we gained detailed insights into the molecular and structural bases of AVR-Pia-RGA5 interaction and the role of the RATX1 decoy domain of RGA5. NMR titration combined with in vitro and in vivo protein-protein interaction analyses identified the AVR-Pia interaction surface that binds to the RATX1 domain. Structure-informed AVR-Pia mutants showed that, although AVR-Pia associates with additional sites in RGA5, binding to the RATX1 domain is necessary for pathogen recognition but can be of moderate affinity. Therefore, RGA5-mediated resistance is highly resilient to mutations in the effector. We propose a model that explains such robust effector recognition as a consequence, and an advantage, of the combination of integrated decoy domains with additional independent effector-NLR interactions.


  • Organizational Affiliation
    • INRA, BGPI, Biology and Genetics of Plant-Pathogen Interactions, Campus International de Baillarguet, 34398 Montpellier, France.

Macromolecule Content 

  • Total Structure Weight: 10.83 kDa 
  • Atom Count: 621 
  • Modeled Residue Count: 79 
  • Deposited Residue Count: 97 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Antivirulence protein AVR-Pia97Pyricularia oryzaeMutation(s): 0 
Gene Names: AVR-Pia
UniProt
Find proteins for R9RX08 (Pyricularia oryzae)
Explore R9RX08 
Go to UniProtKB:  R9RX08
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupR9RX08
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR- 10-INSB-05-0

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-29
    Type: Initial release
  • Version 1.1: 2017-04-05
    Changes: Database references
  • Version 1.2: 2017-08-30
    Changes: Author supporting evidence
  • Version 1.3: 2018-02-28
    Changes: Data collection, Experimental preparation
  • Version 1.4: 2019-05-08
    Changes: Data collection
  • Version 1.5: 2024-10-09
    Changes: Data collection, Database references, Structure summary