5JHH

Crystal structure of the ternary complex between the human RhoA, its inhibitor and the DH/PH domain of human ARHGEF11


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA bound with its inhibitor and PDZRhoGEF

Wang, R.Yan, Z.Lv, Z.Ma, L.Miao, Q.Chen, Q.Wang, F.Li, J.Miao, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Rho guanine nucleotide exchange factor 11
A, E
369Homo sapiensMutation(s): 0 
Gene Names: ARHGEF11 (KIAA0380)
Find proteins for O15085 (Homo sapiens)
Go to Gene View: ARHGEF11
Go to UniProtKB:  O15085
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transforming protein RhoA
B, F
181Homo sapiensMutation(s): 0 
Gene Names: RHOA (ARH12, ARHA, RHO12)
EC: 3.6.5.2
Find proteins for P61586 (Homo sapiens)
Go to Gene View: RHOA
Go to UniProtKB:  P61586
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, E
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
RA0
Query on RA0

Download SDF File 
Download CCD File 
B, F
3-{3-[ethyl(quinolin-2-yl)amino]phenyl}propanoic acid
C20 H20 N2 O2
CGGUWDMVJGUARS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.193 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 88.855α = 90.00
b = 119.049β = 114.39
c = 90.526γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Jiangsu Province science and technology plan items (Jiangsu Province science and technology enterprise technology innovation Fund)ChinaBC2013062

Revision History 

  • Version 1.0: 2017-04-26
    Type: Initial release