The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6
Tan, K., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L25 | 95 | Vibrio vulnificus CMCP6 | Mutation(s): 0  Gene Names: rplY, VV1_2850 | ||
UniProt | |||||
Find proteins for Q8D8W6 (Vibrio vulnificus (strain CMCP6)) Explore Q8D8W6  Go to UniProtKB:  Q8D8W6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8D8W6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | I [auth A] J [auth B] K [auth B] L [auth C] M [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 128.451 | α = 90 |
b = 58.797 | β = 90.51 |
c = 122.004 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | phasing |
HKL-3000 | data scaling |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201200026C |