5IYQ

Protruding domain of GII.4 human norovirus CHDC2094 in complex with HBGA type B (triglycan)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.126 
  • R-Value Observed: 0.128 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Four decades of structural evolution of GII.4 norovirus

Singh, B.K.Hansman, G.S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protruding domain of GII.4 norovirus CHDC2094 capsidA, B305Norovirus Hu/GII.4/CHDC2094/1974/USMutation(s): 0 
UniProt
Find proteins for D0QJ68 (Norovirus Hu/GII.4/CHDC2094/1974/US)
Explore D0QJ68 
Go to UniProtKB:  D0QJ68
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranoseC, D3N/A Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G11065GA
GlyCosmos:  G11065GA
GlyGen:  G11065GA
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.126 
  • R-Value Observed: 0.128 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.81α = 90
b = 105.93β = 90
c = 135.48γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary