5IWB | pdb_00005iwb

Crystal structure of design pentatricopeptide repeat complex with MORF protein

PDB DOI: https://doi.org/10.2210/pdb5IWB/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Arabidopsis thaliana, unidentified
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2016-03-22 Released: 2017-03-29
Deposition Author(s): Yan, J., Zhang, Q., Guan, Z., Zou, T., Yin, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free:
0.199 (Depositor), 0.220 (DCC)
R-Value Work:
0.179 (Depositor)
R-Value Observed:
0.180 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5IWB

This is version 1.1 of the entry. See complete history.

Literature

Structural basis for designer pentatricopeptide repeat proteins interaction with MORF protein

Yan, J., Zhang, Q., Guan, Z., Zou, T., Yin, P.

To be published.

Macromolecule Content

Total Structure Weight: 30.43 kDa
Atom Count: 2,094
Modeled Residue Count: 226
Deposited Residue Count: 265
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Multiple organellar RNA editing factor 9, chloroplastic	A	133	Arabidopsis thaliana	Mutation(s): 2 Gene Names: MORF9, RIP9, At1g11430, T23J18.10
UniProt
Find proteins for Q9LPZ1 (Arabidopsis thaliana) Explore Q9LPZ1 Go to UniProtKB: Q9LPZ1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9LPZ1
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PLS3-PPR	B	132	unidentified	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free: 0.199 (Depositor), 0.220 (DCC)
R-Value Work: 0.179 (Depositor)
R-Value Observed: 0.180 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.11	α = 90
b = 63.11	β = 90
c = 136.303	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-03-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-03-29
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.