5IHF | pdb_00005ihf

Salmonella Typhimurium VirG-like (STV) protein

• PDB DOI: https://doi.org/10.2210/pdb5IHF/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-02-29 Released: 2017-03-08 
• Deposition Author(s): Pandey, N.K., Ray, S., Suar, M., Bhavesh, N.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free: 
  0.213 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

Salmonella Typhimurium VirG-like (STV) protein

Pandey, N.K., Ray, S., Suar, M., Bhavesh, N.S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 26.9 kDa 
• Atom Count: 1,868 
• Modeled Residue Count: 214 
• Deposited Residue Count: 232 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VirG-like protein	A, B	116	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	Mutation(s): 0  Gene Names: SL1344_RS01575
UniProt
Find proteins for A0A0H3ND95 (Salmonella typhimurium (strain SL1344)) Explore A0A0H3ND95  Go to UniProtKB:  A0A0H3ND95

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A], D [auth A], E [auth A], F [auth B], G [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
NA	H [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.58 Å
• R-Value Free:  0.213 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.96	α = 90
b = 59.71	β = 90
c = 63.13	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data processing
SCALA	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-03-08 
Deposition Author(s): Pandey, N.K., Ray, S., Suar, M., Bhavesh, N.S.

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Funding Organization	Location	Grant Number
	India	--

Revision History  

• Version 1.0: 2017-03-08
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description