5HFU

Crystal Structure of Human Hexokinase 2 with cmpd 27, a 2-amido-6-benzenesulfonamide glucosamine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Discovery of a Novel 2,6-Disubstituted Glucosamine Series of Potent and Selective Hexokinase 2 Inhibitors.

Lin, H.Zeng, J.Xie, R.Schulz, M.J.Tedesco, R.Qu, J.Erhard, K.F.Mack, J.F.Raha, K.Rendina, A.R.Szewczuk, L.M.Kratz, P.M.Jurewicz, A.J.Cecconie, T.Martens, S.McDevitt, P.J.Martin, J.D.Chen, S.B.Jiang, Y.Nickels, L.Schwartz, B.J.Smallwood, A.Zhao, B.Campobasso, N.Qian, Y.Briand, J.Rominger, C.M.Oleykowski, C.Hardwicke, M.A.Luengo, J.I.

(2016) ACS Med Chem Lett 7: 217-222

  • DOI: 10.1021/acsmedchemlett.5b00214
  • Primary Citation of Related Structures:  
    5HG1, 5HEX, 5HFU

  • PubMed Abstract: 
  • A novel series of potent and selective hexokinase 2 (HK2) inhibitors, 2,6-disubstituted glucosamines, has been identified based on HTS hits, exemplified by compound 1. Inhibitor-bound crystal structures revealed that the HK2 enzyme could adopt an "induced-fit" conformation ...

    A novel series of potent and selective hexokinase 2 (HK2) inhibitors, 2,6-disubstituted glucosamines, has been identified based on HTS hits, exemplified by compound 1. Inhibitor-bound crystal structures revealed that the HK2 enzyme could adopt an "induced-fit" conformation. The SAR study led to the identification of potent HK2 inhibitors, such as compound 34 with greater than 100-fold selectivity over HK1. Compound 25 inhibits in situ glycolysis in a UM-UC-3 bladder tumor cell line via (13)CNMR measurement of [3-(13)C]lactate produced from [1,6-(13)C2]glucose added to the cell culture.


    Organizational Affiliation

    Cancer Metabolism Chemistry; Cancer Metabolism Biology; and Platform Technology & Sciences, GlaxoSmithKline , 1250 South Collegeville Road, Collegeville, Pennsylvania 19426-0989, United States.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Hexokinase-2A, B923Homo sapiensMutation(s): 0 
Gene Names: HK2
EC: 2.7.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for P52789 (Homo sapiens)
Explore P52789 
Go to UniProtKB:  P52789
PHAROS:  P52789
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
603
Query on 603

Download Ideal Coordinates CCD File 
C [auth A], D [auth A], E [auth B], F [auth B]~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-[[(4-cyanophenyl)sulfonylamino]methyl]-2,4,5-tris(oxidanyl)oxan-3-yl]-3-phenyl-benzamide
C26 H25 N3 O7 S
MPZFVCYRXPGUGA-YLLXKFEGSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.186 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.883α = 90
b = 154.986β = 95.7
c = 114.205γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-30
    Type: Initial release