5HA8

Structure of a cysteine hydrolase

PDB DOI: https://doi.org/10.2210/pdb5HA8/pdb

Classification: HYDROLASE
Organism(s): Microbacterium hydrocarbonoxydans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-12-30 Released: 2017-01-18
Deposition Author(s): Gao, S., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China, Beijing Natural Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.194
R-Value Work: 0.171
R-Value Observed: 0.172

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of a cysteine hydrolase

Gao, S., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 20.46 kDa
Atom Count: 1,478
Modelled Residue Count: 175
Deposited Residue Count: 187
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isochorismatase	A	187	Microbacterium hydrocarbonoxydans	Mutation(s): 0
UniProt
Find proteins for A0A0K0XHU0 (Microbacterium hydrocarbonoxydans) Explore A0A0K0XHU0 Go to UniProtKB: A0A0K0XHU0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0K0XHU0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.194
R-Value Work: 0.171
R-Value Observed: 0.172
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.454	α = 90
b = 69.454	β = 90
c = 88.052	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data processing
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2017-01-18

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31400635
Beijing Natural Science Foundation	China	5154031

Revision History (Full details and data files)

Version 1.0: 2017-01-18
Type: Initial release
Version 1.1: 2017-10-18
Changes: Author supporting evidence
Version 1.2: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.