5HA8 | pdb_00005ha8

Structure of a cysteine hydrolase

• PDB DOI: https://doi.org/10.2210/pdb5HA8/pdb

• Classification: HYDROLASE
• Organism(s): Microbacterium hydrocarbonoxydans
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-12-30 Released: 2017-01-18 
• Deposition Author(s): Gao, S., Feng, Y.
• Funding Organization(s): National Natural Science Foundation of China, Beijing Natural Science Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.194 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.172 (Depositor) 

Literature

Structure of a cysteine hydrolase

Gao, S., Feng, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 20.46 kDa 
• Atom Count: 1,478 
• Modeled Residue Count: 175 
• Deposited Residue Count: 187 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isochorismatase	A	187	Microbacterium hydrocarbonoxydans	Mutation(s): 0
UniProt
Find proteins for A0A0K0XHU0 (Microbacterium hydrocarbonoxydans) Explore A0A0K0XHU0  Go to UniProtKB:  A0A0K0XHU0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.194 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.172 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.454	α = 90
b = 69.454	β = 90
c = 88.052	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data processing
SCALEPACK	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-01-18 
Deposition Author(s): Gao, S., Feng, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31400635
Beijing Natural Science Foundation	China	5154031

Revision History  

• Version 1.0: 2017-01-18
  Type: Initial release
  
• Version 1.1: 2017-10-18
  Changes: Author supporting evidence
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references