5H2T | pdb_00005h2t

Structure of trehalose synthase

PDB DOI: https://doi.org/10.2210/pdb5H2T/pdb

Classification: TRANSFERASE
Organism(s): Thermomonospora curvata DSM 43183
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2016-10-18 Released: 2017-10-18
Deposition Author(s): Wang, D., Huang, H., Zhou, J., Jiang, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.252 (Depositor), 0.253 (DCC)
R-Value Work:
0.205 (Depositor), 0.209 (DCC)
R-Value Observed:
0.208 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structure of trehalose synthase

Wang, D., Huang, H., Zhou, J., Jiang, L.

To be published.

Macromolecule Content

Total Structure Weight: 554.78 kDa
Atom Count: 35,620
Modeled Residue Count: 4,344
Deposited Residue Count: 4,808
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Trehalose synthase	A, B, C, D, E A, B, C, D, E, F, G, H	601	Thermomonospora curvata DSM 43183	Mutation(s): 0 Gene Names: Tcur_3584 EC: 5.4.99.16
UniProt
Find proteins for D1ABU6 (Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / KCTC 9072 / NBRC 15933 / NCIMB 10081 / Henssen B9)) Explore D1ABU6 Go to UniProtKB: D1ABU6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D1ABU6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.252 (Depositor), 0.253 (DCC)
R-Value Work: 0.205 (Depositor), 0.209 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 248.76	α = 90
b = 133.116	β = 112.54
c = 211.777	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data processing
SCALA	data scaling
DENZO	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-10-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-10-18
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.