5GSF | pdb_00005gsf

Structure of roseltide rT1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 5GSF

This is version 1.2 of the entry. See complete history

Literature

Identification and Characterization of Roseltide, a Knottin-type Neutrophil Elastase Inhibitor Derived from Hibiscus sabdariffa.

Loo, S.Kam, A.Xiao, T.Nguyen, G.K.Liu, C.F.Tam, J.P.

(2016) Sci Rep 6: 39401-39401

  • DOI: https://doi.org/10.1038/srep39401
  • Primary Citation Related Structures: 
    5GSF

  • PubMed Abstract: 

    Plant knottins are of therapeutic interest due to their high metabolic stability and inhibitory activity against proteinases involved in human diseases. The only knottin-type proteinase inhibitor against porcine pancreatic elastase was first identified from the squash family in 1989. Here, we report the identification and characterization of a knottin-type human neutrophil elastase inhibitor from Hibiscus sabdariffa of the Malvaceae family. Combining proteomic and transcriptomic methods, we identified a panel of novel cysteine-rich peptides, roseltides (rT1-rT8), which range from 27 to 39 residues with six conserved cysteine residues. The 27-residue roseltide rT1 contains a cysteine spacing and amino acid sequence that is different from the squash knottin-type elastase inhibitor. NMR analysis demonstrated that roseltide rT1 adopts a cystine-knot fold. Transcriptome analyses suggested that roseltides are bioprocessed by asparagine endopeptidases from a three-domain precursor. The cystine-knot structure of roseltide rT1 confers its high resistance against degradation by endopeptidases, 0.2 N HCl, and human serum. Roseltide rT1 was shown to inhibit human neutrophil elastase using enzymatic and pull-down assays. Additionally, roseltide rT1 ameliorates neutrophil elastase-stimulated cAMP accumulation in vitro. Taken together, our findings demonstrate that roseltide rT1 is a novel knottin-type neutrophil elastase inhibitor with therapeutic potential for neutrophil elastase associated diseases.


  • Organizational Affiliation
    • School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore.

Macromolecule Content 

  • Total Structure Weight: 2.63 kDa 
  • Atom Count: 178 
  • Modeled Residue Count: 27 
  • Deposited Residue Count: 27 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
roseltide rT127Hibiscus sabdariffaMutation(s): 0 
UniProt
Find proteins for A0A1S4NYD9 (Hibiscus sabdariffa)
Explore A0A1S4NYD9 
Go to UniProtKB:  A0A1S4NYD9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S4NYD9
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-25
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other, Structure summary
  • Version 1.2: 2024-10-16
    Changes: Data collection, Database references, Structure summary