5GRJ

Crystal structure of human PD-L1 with monoclonal antibody avelumab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.206 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis of anti-PD-L1 monoclonal antibody avelumab for tumor therapy.

Liu, K.Tan, S.Chai, Y.Chen, D.Song, H.Zhang, C.W.Shi, Y.Liu, J.Tan, W.Lyu, J.Gao, S.Yan, J.Qi, J.Gao, G.F.

(2017) Cell Res. 27: 151-153


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
avelumab H chain
H
120N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
avelumab L chain
L
110N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Programmed cell death 1 ligand 1
A
221Homo sapiensMutation(s): 0 
Gene Names: CD274 (B7H1, PDCD1L1, PDCD1LG1, PDL1)
Find proteins for Q9NZQ7 (Homo sapiens)
Go to Gene View: CD274
Go to UniProtKB:  Q9NZQ7
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.206 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.203 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 120.870α = 90.00
b = 98.151β = 108.43
c = 62.036γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
the Ministry of Science and Technology of ChinaChina2013CB531502, 2014CB542503
Grand S&T project of China Health and Family Planning CommissionChina013ZX10004608-002, 2016ZX10004201-009

Revision History 

  • Version 1.0: 2016-11-02
    Type: Initial release
  • Version 1.1: 2017-01-18
    Type: Database references