5GNH | pdb_00005gnh

Myotubularin-related protein 2

• PDB DOI: https://doi.org/10.2210/pdb5GNH/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2016-07-21 Released: 2017-07-26 
• Deposition Author(s): Lee, B.I., Bong, S.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.258 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Literature

Crystal structure of MTMR2

Lee, B.I., Bong, S.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 132.35 kDa 
• Atom Count: 8,330 
• Modeled Residue Count: 1,012 
• Deposited Residue Count: 1,142 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myotubularin-related protein 2	A, B	571	Homo sapiens	Mutation(s): 1  Gene Names: MTMR2, KIAA1073 EC: 3.1.3.95 (PDB Primary Data), 3.1.3.64 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q13614 (Homo sapiens) Explore Q13614  Go to UniProtKB:  Q13614
PHAROS:  Q13614 GTEx:  ENSG00000087053

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A], D [auth B], E [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.258 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 158.344	α = 90
b = 82.82	β = 117.59
c = 99.972	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data processing
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-07-26 
Deposition Author(s): Lee, B.I., Bong, S.M.

Revision History  

• Version 1.0: 2017-07-26
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Refinement description