5G49

Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.

Gnesutta, N.Saad, D.Chaves-Sanjuan, A.Mantovani, R.Nardini, M.

(2017) Mol Plant 10: 645-648


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
A
97Arabidopsis thalianaMutation(s): 0 
Gene Names: NFYB6 (L1L)
Find proteins for Q84W66 (Arabidopsis thaliana)
Go to UniProtKB:  Q84W66
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
B
95Arabidopsis thalianaMutation(s): 0 
Gene Names: NFYC3
Find proteins for Q9ZVL3 (Arabidopsis thaliana)
Go to UniProtKB:  Q9ZVL3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 68.344α = 90.00
b = 81.691β = 90.00
c = 95.998γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHASERphasing
SCALAdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-12-07
    Type: Initial release
  • Version 1.1: 2017-03-15
    Type: Database references
  • Version 1.2: 2017-04-12
    Type: Database references