5FZV

High resolution solution NMR structure of the spider venom peptide U3- scytotoxin-Sth1a


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: TOTAL ENERGY 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Characterization of Three Venom Peptides from the Spitting Spider Scytodes Thoracica.

Ariki, N.K.Munoz, L.E.Armitage, E.L.Goodstein, F.R.George, K.G.Smith, V.L.Vetter, I.Herzig, V.King, G.F.Loening, N.M.

(2016) PLoS One 11: 56291

  • DOI: 10.1371/journal.pone.0156291
  • Primary Citation of Related Structures:  
    5FZV, 5FZW, 5FZX

  • PubMed Abstract: 
  • We present the solution-state NMR structures and preliminary functional characterizations of three venom peptides identified from the spitting spider Scytodes thoracica. Despite little sequence identity to other venom peptides, structural characterization reveals that these peptides contain an inhibitor cystine knot motif common to many venom peptides ...

    We present the solution-state NMR structures and preliminary functional characterizations of three venom peptides identified from the spitting spider Scytodes thoracica. Despite little sequence identity to other venom peptides, structural characterization reveals that these peptides contain an inhibitor cystine knot motif common to many venom peptides. These are the first structures for any peptide or protein from spiders of the Scytodidae family. Many venom peptides target neuronal ion channels or receptors. However, we have not been able to determine the target of these Scytodes peptides so we can only state with certainty the channels and receptors that they do not target.


    Organizational Affiliation

    Chemistry Department, Lewis & Clark College, 0615 SW Palatine Hill Road, Portland, OR, 97219, United States of America.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Venom peptide U3-SYTX-Sth1aA32Scytodes thoracicaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A0A0V662 (Scytodes thoracica)
Explore A0A0A0V662 
Go to UniProtKB:  A0A0A0V662
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0A0V662
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: TOTAL ENERGY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-08
    Type: Initial release
  • Version 2.0: 2017-06-14
    Changes: Atomic model, Database references, Derived calculations, Source and taxonomy, Structure summary