5FGY | pdb_00005fgy

Structure of human adenovirus 2 protease with cofactor pVIC

• PDB DOI: https://doi.org/10.2210/pdb5FGY/pdb

• Classification: HYDROLASE
• Organism(s): Human adenovirus 2, Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2015-12-21 Released: 2016-01-13 
• Deposition Author(s): Davis, R.R., Martinez, P., Hollis, T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.197 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.176 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.177 (Depositor) 

Starting Model: experimental

Literature

Structure of human adenovirus 2 protease with cofactor pVIC

Davis, R.R., Martinez, P., Hollis, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 24.47 kDa 
• Atom Count: 1,871 
• Modeled Residue Count: 214 
• Deposited Residue Count: 215 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protease	A	204	Human adenovirus 2	Mutation(s): 0  Gene Names: L3 EC: 3.4.22.39
UniProt
Find proteins for P03252 (Human adenovirus C serotype 2) Explore P03252  Go to UniProtKB:  P03252

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
pVIC	B	11	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for P03274 (Human adenovirus C serotype 2) Explore P03274  Go to UniProtKB:  P03274

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.197 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.176 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.177 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 112.42	α = 90
b = 112.42	β = 90
c = 49.5	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
Coot	model building
MOLREP	phasing
d*TREK	data scaling
d*TREK	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-01-13 
Deposition Author(s): Davis, R.R., Martinez, P., Hollis, T.

Revision History  

• Version 1.0: 2016-01-13
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.2: 2024-11-06
  Changes: Structure summary