5FET

Crystal Structure of PVX_084705 in presence of Compound 2

• PDB DOI: https://doi.org/10.2210/pdb5FET/pdb
• Entry: 5FET supersedes: 5F0D

• Classification: TRANSFERASE
• Organism(s): Plasmodium vivax Sal-1
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2015-12-17 Released: 2016-01-13 
• Deposition Author(s): Wernimont, A.K., Tempel, W., Walker, J.R., He, H., Seitova, A., Hills, T., Neculai, A.M., Baker, D.A., Flueck, C., Kettleborough, C.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.07 Å
• R-Value Free: 0.247 
• R-Value Work: 0.228 
• R-Value Observed: 0.229 

Literature

Crystal Structure of PVX_084705 in presence of Compound 2

Wernimont, A.K., Tempel, W., Walker, J.R., He, H., Seitova, A., Hills, T., Neculai, A.M., Baker, D.A., Flueck, C., Kettleborough, C.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 97.09 kDa 
• Atom Count: 6,319 
• Modelled Residue Count: 802 
• Deposited Residue Count: 847 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cGMP-dependent protein kinase, putative	A	847	Plasmodium vivax Sal-1	Mutation(s): 0  Gene Names: PVX_084705
UniProt
Find proteins for A5K0N4 (Plasmodium vivax (strain Salvador I)) Explore A5K0N4  Go to UniProtKB:  A5K0N4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1TR	B [auth A]	4-[7-[(dimethylamino)methyl]-2-(4-fluorophenyl)imidazo[1,2-a]pyridin-3-yl]pyrimidin-2-amine C20 H19 F N6 HEPQZLAAWOEYMZ-UHFFFAOYSA-N

Binding Affinity Annotations
ID	Source	Binding Affinity
1TR	BindingDB:  5FET	IC50: 3 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.07 Å
• R-Value Free: 0.247 
• R-Value Work: 0.228 
• R-Value Observed: 0.229 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 190.52	α = 90
b = 117.25	β = 94.34
c = 67.42	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
HKL-2000	data scaling
PHASER	phasing
BUSTER	refinement
DENZO	data reduction
SCALEPACK	data scaling
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-01-13 
Deposition Author(s): Wernimont, A.K., Tempel, W., Walker, J.R., He, H., Seitova, A., Hills, T., Neculai, A.M., Baker, D.A., Flueck, C., Kettleborough, C.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M., Structural Genomics Consortium (SGC)
• This entry supersedes: 5F0D

Revision History  

• Version 1.0: 2016-01-13
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Advisory, Derived calculations, Refinement description
• Version 1.2: 2024-03-06
  Changes: Advisory, Data collection, Database references