5F9M

Crystal structure of native B3275, member of MccF family of enzymes

• PDB DOI: https://doi.org/10.2210/pdb5F9M/pdb

• Classification: HYDROLASE
• Organism(s): Bacillus cereus ATCC 10987
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2015-12-09 Released: 2015-12-30 
• Deposition Author(s): Nocek, B., Severinov, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.227 
• R-Value Work: 0.187 
• R-Value Observed: 0.189 

Literature

Crystal structure of native B3275, member of MccF family of enzymes.

Nocek, B., Severinov, K., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 157.47 kDa 
• Atom Count: 11,201 
• Modelled Residue Count: 1,376 
• Deposited Residue Count: 1,376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MccC family protein	A, B, C, D	344	Bacillus cereus ATCC 10987	Mutation(s): 1  Gene Names: BCE_3281
UniProt
Find proteins for Q734X3 (Bacillus cereus (strain ATCC 10987 / NRS 248)) Explore Q734X3  Go to UniProtKB:  Q734X3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.227 
• R-Value Work: 0.187 
• R-Value Observed: 0.189 
• Space Group: P 1
• Diffraction Data: https://doi.org/10.18430/M35F9M

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.779	α = 92.12
b = 70.858	β = 90.24
c = 85.49	γ = 89.87

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2015-12-30 
Deposition Author(s): Nocek, B., Severinov, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272200700058C
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201200026C

Revision History  

• Version 1.0: 2015-12-30
  Type: Initial release
  
• Version 1.1: 2017-02-08
  Changes: Structure summary
• Version 1.2: 2017-09-27
  Changes: Author supporting evidence
• Version 1.3: 2019-12-11
  Changes: Author supporting evidence
• Version 1.4: 2023-09-27
  Changes: Data collection, Database references, Refinement description