5F69 | pdb_00005f69

Drosophila Melanogaster Cycle W398A PAS-B with Bound Glycerol

PDB DOI: https://doi.org/10.2210/pdb5F69/pdb

Classification: CIRCADIAN CLOCK PROTEIN
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-12-05 Released: 2016-12-07
Deposition Author(s): Manahan, C.C., Crane, B.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free:
0.198 (Depositor), 0.202 (DCC)
R-Value Work:
0.170 (Depositor), 0.175 (DCC)
R-Value Observed:
0.172 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5F69

This is version 1.1 of the entry. See complete history.

Literature

Drosophila Melanogaster Cycle PAS-B with Bound Glycerol

Manahan, C.C., Crane, B.R.

To be published.

Macromolecule Content

Total Structure Weight: 12.2 kDa
Atom Count: 1,000
Modeled Residue Count: 103
Deposited Residue Count: 103
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein cycle	A	103	Drosophila melanogaster	Mutation(s): 1 Gene Names: cyc, CG8727
UniProt
Find proteins for O61734 (Drosophila melanogaster) Explore O61734 Go to UniProtKB: O61734
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O61734
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free: 0.198 (Depositor), 0.202 (DCC)
R-Value Work: 0.170 (Depositor), 0.175 (DCC)
R-Value Observed: 0.172 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.298	α = 90
b = 44.398	β = 114.75
c = 38.502	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-12-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-07
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.