X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion
Lashkov, A.A., Balaev, V.V., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pyrimidine-nucleoside phosphorylase | 433 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0  Gene Names: pdp, BSU39400 EC: 2.4.2.2 | ||
UniProt | |||||
Find proteins for P39142 (Bacillus subtilis (strain 168)) Explore P39142  Go to UniProtKB:  P39142 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P39142 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | C [auth A], D [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
NA Query on NA | E [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.463 | α = 90 |
b = 91.35 | β = 90 |
c = 109.8 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SCALA | data scaling |
MOLREP | phasing |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
RFBR | Russian Federation | 14-04-00952 |