5ED3

crystal structure of human Hint1 complexing with AP5A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.309 Å
  • R-Value Free: 0.155 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Convergent Regulation of Transcriptional Repression by a Second Messenger and Post-translation Modifications

Wang, J.Motzik, A.Fang, P.Amir, E.Kim, B.Hand, J.M.Kim, J.H.Chen, X.Kim, S.Razin, E.Guo, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histidine triad nucleotide-binding protein 1
A, B
128Homo sapiensMutation(s): 0 
Gene Names: HINT1 (HINT, PKCI1, PRKCNH1)
EC: 3.-.-.-
Find proteins for P49773 (Homo sapiens)
Go to Gene View: HINT1
Go to UniProtKB:  P49773
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download SDF File 
Download CCD File 
B
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
AMP
Query on AMP

Download SDF File 
Download CCD File 
B
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.309 Å
  • R-Value Free: 0.155 
  • R-Value Work: 0.146 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 78.454α = 90.00
b = 46.306β = 94.92
c = 64.102γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM100136
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM106134

Revision History 

  • Version 1.0: 2017-01-25
    Type: Initial release
  • Version 1.1: 2019-04-17
    Type: Author supporting evidence, Data collection