Download MendeleyHuman PPARgamma ligand binding dmain in complex with SR1664
Jang, J.Y.To be published.
5DWL
Human PPARgamma ligand binding dmain in complex with SR1664
- DOI: 10.2210/pdb5DWL/pdb
- Classification: TRANSCRIPTION/TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-09-22 Released: 2016-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.238
- R-Value Work: 0.206
- R-Value Observed: 0.207
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peroxisome proliferator-activated receptor gamma | A | 287 | Homo sapiens | Mutation(s): 0 Gene Names: PPARG, NR1C3 |  |
Find proteins for P37231 (Homo sapiens) Explore P37231 Go to UniProtKB: P37231 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P37231 GTEx: ENSG00000132170 | |||||
Protein Feature ViewExpand | |||||
| |||||
- Find similar proteins by: Sequence | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear receptor coactivator 1 | B | 16 | Homo sapiens | Mutation(s): 0 Gene Names: NCOA1, BHLHE74, SRC1 EC: 2.3.1.48 |  |
Find proteins for Q15788 (Homo sapiens) Explore Q15788 Go to UniProtKB: Q15788 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q15788 GTEx: ENSG00000084676 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3JX Query on 3JX | A | 4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid C33 H29 N3 O5 IIJDFXNUWZTHIM-NRFANRHFSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.238
- R-Value Work: 0.206
- R-Value Observed: 0.207
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.076 | α = 90 |
| b = 130.871 | β = 90 |
| c = 53.063 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2015-09-22
- Released Date: 2016-09-21 Deposition Author(s): Jang, J.Y.
Revision History (Full details and data files)
- Version 1.0: 2016-09-21
Type: Initial release
