5DEV | pdb_00005dev

High resolution structure of CCG DNA repeats at 1.71 angstrom resolution

• PDB DOI: https://doi.org/10.2210/pdb5DEV/pdb
• NAKB: 5DEV

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 2015-08-26 Released: 2016-09-07 
• Deposition Author(s): Hou, M.H., Jhan, C.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 
  0.285 (Depositor), 0.282 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.234 (DCC) 
• R-Value Observed: 
  0.230 (Depositor) 

Literature

High resolution structure of CCG DNA repeats at 1.71 angstrom resolution

Hou, M.H., Jhan, C.R.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3.3 kDa 
• Atom Count: 278 
• Modeled Residue Count: 11 
• Deposited Residue Count: 11 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3')	A	11	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free:  0.285 (Depositor), 0.282 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.234 (DCC) 
• R-Value Observed: 0.230 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.228	α = 90
b = 38.228	β = 90
c = 54.227	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-09-07 
Deposition Author(s): Hou, M.H., Jhan, C.R.

Revision History  

• Version 1.0: 2016-09-07
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations