5D9Z

Structure of Colocasia Esculenta Agglutinin with mannose bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.369 
  • R-Value Work: 0.316 
  • R-Value Observed: 0.317 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

High resolution crystal structures of Colocasia esculenta agglutinin with and without mannose

Chattopadhyaya, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tuber agglutinin A109Colocasia esculentaMutation(s): 0 
Gene Names: CEA
Find proteins for R9RL27 (Colocasia esculenta)
Explore R9RL27 
Go to UniProtKB:  R9RL27
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Tuber agglutinin B112Colocasia esculentaMutation(s): 0 
Gene Names: CEA
Find proteins for R9RL27 (Colocasia esculenta)
Explore R9RL27 
Go to UniProtKB:  R9RL27
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.369 
  • R-Value Work: 0.316 
  • R-Value Observed: 0.317 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.896α = 90
b = 75.896β = 90
c = 124.065γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
d*TREKdata reduction
d*TREKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-08-19 
  • Released Date: 2016-02-24 
  • Deposition Author(s): Chattopadhyaya, R.

Funding OrganizationLocationGrant Number
DST, Government of IndiaIndiaInstitutional

Revision History  (Full details and data files)

  • Version 1.0: 2016-02-24
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary