5D18

Crystal structure of Mycobacterium tuberculosis Rv0302, form I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.193 

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This is version 1.3 of the entry. See complete history


Literature

Crystal structure of the Mycobacterium tuberculosis transcriptional regulator Rv0302.

Chou, T.H.Delmar, J.A.Wright, C.C.Kumar, N.Radhakrishnan, A.Doh, J.K.Licon, M.H.Reddy Bolla, J.Lei, H.T.Rajashankar, K.R.Su, C.C.Purdy, G.E.Yu, E.W.

(2015) Protein Sci 

  • DOI: https://doi.org/10.1002/pro.2802
  • Primary Citation of Related Structures:  
    5D18, 5D19

  • PubMed Abstract: 

    Mycobacterium tuberculosis is a pathogenic bacterial species, which is neither Gram positive nor Gram negative. It has a unique cell wall, making it difficult to kill and conferring resistance to antibiotics that disrupt cell wall biosynthesis. Thus, the mycobacterial cell wall is critical to the virulence of these pathogens. Recent work shows that the mycobacterial membrane protein large (MmpL) family of transporters contributes to cell wall biosynthesis by exporting fatty acids and lipidic elements of the cell wall. The expression of the Mycobacterium tuberculosis MmpL proteins is controlled by a complicated regulatory network system. Here we report crystallographic structures of two forms of the TetR-family transcriptional regulator Rv0302, which participates in regulating the expression of MmpL proteins. The structures reveal a dimeric, two-domain molecule with architecture consistent with the TetR family of regulators. Comparison of the two Rv0302 crystal structures suggests that the conformational changes leading to derepression may be due to a rigid body rotational motion within the dimer interface of the regulator. Using fluorescence polarization and electrophoretic mobility shift assays, we demonstrate the recognition of promoter and intragenic regions of multiple mmpL genes by this protein. In addition, our isothermal titration calorimetry and electrophoretic mobility shift experiments indicate that fatty acids may be the natural ligand of this regulator. Taken together, these experiments provide new perspectives on the regulation of the MmpL family of transporters.


  • Organizational Affiliation

    Department of Physics and Astronomy, Iowa State University, Ames, Iowa, 50011.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TetR family transcriptional regulator216Mycobacterium tuberculosisMutation(s): 0 
Gene Names: acrR
UniProt
Find proteins for O07229 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore O07229 
Go to UniProtKB:  O07229
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO07229
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.193 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.628α = 90
b = 116.628β = 90
c = 94.178γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
SHELXDEphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-07
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Database references, Derived calculations, Refinement description
  • Version 1.2: 2020-02-26
    Changes: Derived calculations
  • Version 1.3: 2024-03-06
    Changes: Data collection, Database references