5CLZ | pdb_00005clz

X-ray structure of TTR mutant - T119M at 1.22A resolution

• PDB DOI: https://doi.org/10.2210/pdb5CLZ/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-07-16 Released: 2016-07-27 
• Deposition Author(s): Yee, A.W., Moulin, M., Mossou, E., Cooper, J.B., Haertlein, M., Mitchell, E.P., Forsyth, V.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.22 Å
• R-Value Free: 
  0.197 (Depositor), 0.205 (DCC) 
• R-Value Work: 
  0.162 (Depositor), 0.171 (DCC) 
• R-Value Observed: 
  0.164 (Depositor) 

Starting Model: experimental

Literature

X-ray structure of TTR mutant - T119M at 1.22A resolution

Yee, A.W., Moulin, M., Mossou, E., Cooper, J.B., Mitchell, E.P., Haertlein, M., Forsyth, V.T.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 28.13 kDa 
• Atom Count: 2,039 
• Modeled Residue Count: 232 
• Deposited Residue Count: 260 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transthyretin	A, B	130	Homo sapiens	Mutation(s): 1  Gene Names: TTR, PALB
UniProt & NIH Common Fund Data Resources
Find proteins for P02766 (Homo sapiens) Explore P02766  Go to UniProtKB:  P02766
PHAROS:  P02766 GTEx:  ENSG00000118271

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.22 Å
• R-Value Free:  0.197 (Depositor), 0.205 (DCC) 
• R-Value Work:  0.162 (Depositor), 0.171 (DCC) 
• R-Value Observed: 0.164 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.91	α = 90
b = 85.721	β = 90
c = 63.359	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MxCuBE	data collection
XDS	data reduction
SCALA	data scaling
Coot	model building
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-27 
Deposition Author(s): Yee, A.W., Moulin, M., Mossou, E., Cooper, J.B., Haertlein, M., Mitchell, E.P., Forsyth, V.T.

Revision History  

• Version 1.0: 2016-07-27
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description