Download MendeleyCrystal structure of SZ348 in complex with S,S-cyclohexanediol
Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.To be published.
5CLK
Crystal structure of SZ348 in complex with S,S-cyclohexanediol
- PDB DOI: https://doi.org/10.2210/pdb5CLK/pdb
- Classification: HYDROLASE
- Organism(s): Rhodococcus erythropolis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-07-16 Released: 2016-07-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.231
- R-Value Work: 0.185
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Limonene-1,2-epoxide hydrolase | 155 | Rhodococcus erythropolis | Mutation(s): 3 Gene Names: limA EC: 3.3.2.8 |  | |
UniProt | |||||
Find proteins for Q9ZAG3 (Rhodococcus erythropolis) Explore Q9ZAG3 Go to UniProtKB: Q9ZAG3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9ZAG3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3ZQ Query on 3ZQ | F [auth A], J [auth B] | (1S,2S)-cyclohexane-1,2-diol C6 H12 O2 PFURGBBHAOXLIO-WDSKDSINSA-N |  | ||
| NI Query on NI | C [auth A], D [auth A], E [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| K Query on K | G [auth A], H [auth A], K [auth B], L [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.231
- R-Value Work: 0.185
- R-Value Observed: 0.188
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.943 | α = 90 |
| b = 104.943 | β = 90 |
| c = 73.896 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-07-20 Deposition Author(s): Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.
Revision History (Full details and data files)
- Version 1.0: 2016-07-20
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
