5C9Z

Crystal structure of PRMT5:MEP50 with EPZ015866 and sinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of PRMT5/MEP50 complex with sinefungin and 15866

Boriack-Sjodin, P.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein arginine N-methyltransferase 5
A
645Homo sapiensMutation(s): 0 
Gene Names: PRMT5 (HRMT1L5, IBP72, JBP1, SKB1)
EC: 2.1.1.320
Find proteins for O14744 (Homo sapiens)
Go to Gene View: PRMT5
Go to UniProtKB:  O14744
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Methylosome protein 50
B
350Homo sapiensMutation(s): 0 
Gene Names: WDR77 (MEP50, WD45)
Find proteins for Q9BQA1 (Homo sapiens)
Go to Gene View: WDR77
Go to UniProtKB:  Q9BQA1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
SFG
Query on SFG

Download SDF File 
Download CCD File 
A
SINEFUNGIN
ADENOSYL-ORNITHINE
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
 Ligand Interaction
4Z2
Query on 4Z2

Download SDF File 
Download CCD File 
A
2-(cyclobutylamino)-N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]pyridine-4-carboxamide
C22 H28 N4 O2
TWKYXZSXXXKKJU-FQEVSTJZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.237 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 102.810α = 90.00
b = 137.780β = 90.00
c = 178.910γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-06-29 
  • Released Date: 2016-06-29 
  • Deposition Author(s): Boriack-Sjodin, P.A.

Revision History 

  • Version 1.0: 2016-06-29
    Type: Initial release