5C9D

Crystal structure of a retropepsin-like aspartic protease from Rickettsia conorii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.231 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Structure of RC1339/APRc from Rickettsia conorii, a retropepsin-like aspartic protease

Li, M.Gustchina, A.Cruz, R.Simoes, M.Curto, P.Martinez, J.Faro, C.Simoes, I.Wlodawer, A.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2119-2126


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ApRick proteaseA, B134Rickettsia conoriiMutation(s): 0 
Gene Names: RC1339
UniProt
Find proteins for Q92FY8 (Rickettsia conorii (strain ATCC VR-613 / Malish 7))
Explore Q92FY8 
Go to UniProtKB:  Q92FY8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92FY8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
C [auth A]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.231 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.29α = 90
b = 105.29β = 90
c = 90.996γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-14
    Type: Initial release
  • Version 2.0: 2018-03-14
    Changes: Advisory, Atomic model, Database references, Derived calculations, Non-polymer description, Polymer sequence, Source and taxonomy, Structure summary