Download MendeleyFunction of conserved residues in the class II PurE active site
Sullivan, K.L., Mathews, I.I., Kappock, T.j.To be published.
5C5D
Crystal structure of Treponema denticola PurE2-S38D
- PDB DOI: https://doi.org/10.2210/pdb5C5D/pdb
- Classification: LYASE
- Organism(s): Treponema denticola ATCC 35405
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-06-19 Released: 2016-07-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.69 Å
- R-Value Free: 0.190
- R-Value Work: 0.154
- R-Value Observed: 0.156
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| phosphoribosylaminoimidazole carboxylase | 159 | Treponema denticola ATCC 35405 | Mutation(s): 1 Gene Names: purE, TDE_0687 EC: 4.1.1.21 |  | |
UniProt | |||||
Find proteins for Q73PV9 (Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)) Explore Q73PV9 Go to UniProtKB: Q73PV9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q73PV9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | E [auth A], F [auth A], G [auth B], H [auth C], I [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.69 Å
- R-Value Free: 0.190
- R-Value Work: 0.154
- R-Value Observed: 0.156
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.084 | α = 90 |
| b = 154.958 | β = 90 |
| c = 89.13 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-07-06 Deposition Author(s): Sullivan, K.L., Kappock, T.J.
Revision History (Full details and data files)
- Version 1.0: 2016-07-06
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
