5BNQ

Crystal structure of hRANKL-mRANK complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.172 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A RANKL mutant used as an inter-species vaccine for efficient immunotherapy of osteoporosis.

Liu, C.Zhao, Y.He, W.Wang, W.Chen, Y.Zhang, S.Ma, Y.Gohda, J.Ishida, T.Walter, T.S.Owens, R.J.Stuart, D.I.Ren, J.Gao, B.

(2015) Sci Rep 5: 14150-14150

  • DOI: 10.1038/srep14150
  • Primary Citation of Related Structures:  
    5BNQ

  • PubMed Abstract: 
  • Anti-cytokine therapeutic antibodies have been demonstrated to be effective in the treatment of several auto-immune disorders. However, The problems in antibody manufacture and the immunogenicity caused by multiple doses of antibodies inspire people to use auto-cytokine as immunogen to induce anti-cytokine antibodies ...

    Anti-cytokine therapeutic antibodies have been demonstrated to be effective in the treatment of several auto-immune disorders. However, The problems in antibody manufacture and the immunogenicity caused by multiple doses of antibodies inspire people to use auto-cytokine as immunogen to induce anti-cytokine antibodies. Nevertheless, the tolerance for inducing immune response against self-antigen has hindered the wide application of the strategy. To overcome the tolerance, here we proposed a strategy using the inter-species cytokine as immunogen for active immunization (TISCAI) to induce anti-cytokine antibody. As a proof of concept, an inter-species cytokine RANKL was successfully used as immunogen to induce anti-RANKL immune response. Furthermore, to prevent undesirable side-effects, the human RANKL was mutated based on the crystal structure of the complex of human RANKL and its rodent counterpart receptor RANK. We found, the antibodies produced blocked the osteoclast development in vitro and osteoporosis in OVX rat models. The results demonstrated this strategy adopted is very useful for general anti-cytokine immunotherapy for different diseases settings.


    Organizational Affiliation

    Abingen Ltd, Oxford, UK.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tumor necrosis factor ligand superfamily member 11A160Homo sapiensMutation(s): 0 
Gene Names: TNFSF11OPGLRANKLTRANCE
UniProt & NIH Common Fund Data Resources
Find proteins for O14788 (Homo sapiens)
Explore O14788 
Go to UniProtKB:  O14788
PHAROS:  O14788
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14788
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Tumor necrosis factor receptor superfamily member 11AB [auth R]216Mus musculusMutation(s): 0 
Gene Names: Tnfrsf11aRank
UniProt
Find proteins for O35305 (Mus musculus)
Explore O35305 
Go to UniProtKB:  O35305
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO35305
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.172 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.188α = 90
b = 122.188β = 90
c = 94.473γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2015-10-14 
  • Deposition Author(s): Ren, J.

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-14
    Type: Initial release